Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA5 ← / → uspC IS1 family protein InsA/universal stress protein C

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)7 (0.510) 7/400 NT 100% intergenic (‑271/‑267) insA5/uspC IS1 family protein InsA/universal stress protein C
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)15 (1.090) 15/400 NT 100% intergenic (‑274/‑264) insA5/uspC IS1 family protein InsA/universal stress protein C
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

GCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCA  >  NC_000913/2289847‑2290287
                                                                                                                                                                                                                                                                          |                                                                                                                                                                              
gcatgcaGTGAATGCGTAGCATGGTTTCCAGCGGAGAAGGTCGCCGGCCATTACCGGCCTTGGGGTAAAACGGCTCGATGACTCCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACNTGATCTCATATCAGGGACTTGTTCGCACCTTCCATa                                                                                                                                                                             <  1:105072/270‑1 (MQ=14)
      aGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGTCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGAACCTTCCATAACGCTGTAGc                                                                                                                                                                   >  1:213085/1‑274 (MQ=21)
                                                                                                                cTCCATGCGGGACAAGAAAATCTCTTTTCCGGTCTGNCGGCGCTTACTGCTGAATTCACTGTCGCCGAAGGTAAGTTGATGACTCATGATGACCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCAt                                                                                                                                                                              >  1:109564/1‑157 (MQ=9)
                                                                                                                    ctGCGGGACAAGAAAATCTCTTTTCCGGTCTGACGGCGCTTACTTCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACg                                                                                                                                                                          <  2:109564/156‑1 (MQ=18)
                                                                                                                                                                                              atgaCTCATGATGAACCCTGTTCTATGCCTCCAGATGACAAAGATGATCTCATATCAGGGACTTGTTCCCACCTTCCAGAACGCTGTAGCCACCAGAACAGCTATTGCGGATCGACCAAGAGAAACAGAACCAGATTGATg                                                                                                                >  2:131942/1‑141 (MQ=21)
                                                                                                                                                                                                  cTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGATCGCACCCTCCATCACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAtt                                                                                                            <  1:131942/141‑1 (MQ=255)
                                                                                                                                                                                                    cATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATAATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCCGAACGACAAAGAGAAACAGAAACAGAGTGATGCATTGAGCGTTCATCCTATTAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCa                                                  <  1:25130/197‑1 (MQ=255)
                                                                                                                                                                                                                           tCCAGATGACAAACATGATCTCATAACAGGGACTTGTTCGCACCTTCCATAACGCTGTAGACACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAGACATTGAGCTTTCATCATATGAAATTAATTGATGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGca  <  1:200870/222‑1 (MQ=255)
                                                                                                                                                                                                                           cccAGATGACAAACATGATCGCATATCAGGGACTTGTTCACACCTTCCATAACGCTGTAGCCACCAGAACAGATAGTGAGGAACGACAAAGAGAAACAGAACCAGATTg                                                                                                                   <  1:257329/108‑1 (MQ=255)
                                                                                                                                                                                                                                                                          |                                                                                                                                                                              
GCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCA  >  NC_000913/2289847‑2290287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.