New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	21 (1.080)	8 (0.450)	8/352	NT	37.0%	coding (290/630 nt)	ycfK	protein StfP
	?	NC_000913	1209619 =	8 (0.450)					intergenic (‑500/‑66)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

AAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGC  >  NC_000913/1207519‑1207982                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                 aaaaCCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCAACGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCACCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTCCTTACCGCACTTCGCGCACTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGATCTCGAAAACCTTg                                                                                                                                                                                                >  1:341838/1‑274 (MQ=255)                       tCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGGAAAAc                                                                                                                                                                           >  1:389409/1‑273 (MQ=255)                                    gacctgTTTTCCCCTGGGAAACCCCCAAGCCGGCACCACTGCAACCGTGCTGGATGATGACTACTGTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCAGCCGGTGACAGCCTGGAGAAGGGGCGTCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTGTGGCGATATCAAATCGGATGGCACTGTGCAAGCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACgg                                                                                                                                                            <  2:389408/270‑1 (MQ=17)                                     acccatttccccccTGGTAACCCCCATCCCGCCACGACTACCACCGTACTGGATGATGACTACTTTGACAGGTTGCAGGAGGAACTTGGCGTCGTGGTGGGCGCAGCCGGTGGCAGCCTGGAGAAGGGGCGGAACGACCAGTTACTTACCGAACTGCGCGCACCGCTGTTAAGCCGAAAGAATCCGTTTGGCGATAACAAATCAGATGGCGCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAAGCAGCAACAGc                                                                                                                                                           <  2:341837/265‑1 (MQ=17)                                       tcacctgccgataatgtcctgagcagttttttcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatactgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaatgcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaactaaatgcaaccaagggca                                                                                                                                                         <  2:259357‑M1/42‑11 (MQ=255)                                                            agcagttttttcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                                                                    >  1:259358‑M1/213‑275 (MQ=255)                                                              aGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCAGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTATGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                                                                >  1:13072/1‑245 (MQ=255)                                                                                             tgaCTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGACGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGCTGGCACTGTGCAAACGGCTCTCGAAAACTTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                                                                       >  1:97319/1‑255 (MQ=255)                                                                                                                       aaCTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCTAATCGGATGCCACTGTGCAAACGGCTATCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                                                                >  1:385576/1‑188 (MQ=255)                                                                                                                                               cgcattacgttgtagatctgtgttctggtcgtttgttgataagcgtacatggccaataagcatgttaaatccccctggtaaaagcaggaatgatgctatttgctttttatttcttcattttcatcaacgTTGGTTTgg                                                                                                                                                                                          <  1:391253‑M1/9‑1 (MQ=255)                                                                                                                                                    tacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagcccataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGAAAAACTCAATGCAGCCCCGGCTACCTTAGGACGCACCGGTCTCATAGc                                                                                                                                <  1:172037‑M1/67‑1 (MQ=255)                                                                                                                                                        ttgtagatctttgttctggtcatttgttgatacgcgtacatagccattaagcatgttaaagccccctggtaaaagcaggaatggtgccagttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                                                              >  1:321322‑M1/121‑205 (MQ=255)                                                                                                                                                             gagaAGGGGCGGCACGGCCAGTTACGTACCGGACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                                                                      <  1:111447/176‑1 (MQ=255)                                                                                                                                                                   gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGTTGTTAAGCCGAAAGAATCCCTTTGGCGGTATCAAATCGGATGGCACTGTGCAAACGGCTTGCGAAAACCTTGGGTTGGGAGAAGGAGCAAAACTAAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAg                              <  1:379049/274‑1 (MQ=255)                                                                                                                                                                          gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg                                                                                                                                                                                    <  2:303284‑M1/15‑1 (MQ=255)                                                                                                                                                                            catttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                                                                               >  1:391635‑M1/101‑200 (MQ=255)                                                                                                                                                                                            tacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                                                                <  1:145713‑M1/67‑1 (MQ=255)                                                                                                                                                                                            cACTTCGCGCGCTCCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGATTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTtaata      >  1:235013/1‑273 (MQ=255)                                                                                                                                                                                                tCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTTGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                                                                  >  1:231475/1‑161 (MQ=255)                                                                                                                                                                                                 cgcgcgcgGCTGTTAAACCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCATTTAATAATGc  <  1:250601/272‑1 (MQ=255)                                                                                                                                                                                                   ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                                                       <  1:144860‑M1/60‑1 (MQ=255)                                                                                                                                                                                                       taagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                                                   >  2:144859‑M1/74‑137 (MQ=255)                                                                                                                                                                                                                    gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCATTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATaac                                                                                                                                >  1:105394/1‑125 (MQ=255)                                                                                                                                                                                                                                                           tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                                                     >  2:283859/1‑99 (MQ=255)                                                                                                                                                                                                                                                           tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCAGTAATCATACAGTGGGGGTGGAATGCCGCaaacg                                                            >  1:24384/1‑154 (MQ=255)                                                                                                                                                                                                                                                               accGGCTCGTGAAAACCGTGGTTTGGTAGAAGGAGCAGAACTCAAAGCAGCAACGGCTACAATAGGACGCACCGGTTTCATAGCTACACCGGTTATGATTGGTTGTAGTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAGAGCATc                                                        <  2:24384/154‑1 (MQ=255)                                                                                                                                                                                                                                                               aaCGGCTCTCTAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACTGCTACATTAGGACGCACCGGTTTCATAGCTATACCTGTTATGAGTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaa                                                               <  1:271579/149‑1 (MQ=255)                                                                                                                                                                                                                                                               aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                                                                                 <  1:283860/99‑1 (MQ=255)                                                                                                                                                                                                                                                                     tctcGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGATTCATAGCTATACTGTGTATGATTGGTGGCATTGCGGAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggggcggga                                     >  1:401172/1‑164 (MQ=255)                                                                                                                                                                                                                                                                     tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCctct                                                 >  1:296782/1‑157 (MQ=255)                                                                                                                                                                                                                                                                         gAAAACCTTTGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                                                       <  2:89444/131‑1 (MQ=255)                                                                                                                                                                                                                                                                         gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg                                             <  2:296781/157‑1 (MQ=255)                                                                                                                                                                                                                                                                              ccTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAGAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTccc                    >  1:360414/1‑177 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                 AAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGC  >  NC_000913/1207519‑1207982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.