New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	21 (1.080)	8 (0.450)	8/352	NT	37.0%	coding (290/630 nt)	ycfK	protein StfP
	?	NC_000913	1209619 =	8 (0.450)					intergenic (‑500/‑66)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

TCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTAT  >  NC_000913/1209418‑1209893                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                   tCCCCCGCCCGTCATCCCAGCCACAAATAAACTCACCACGTAAATCAGGCAAGTTATTTGTCGGATAAGCCTGTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGTCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGAACACCAACAGGCAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                                                                                                                                                                            <  1:330271/274‑1 (MQ=255)     ccgcccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGTCGGAGTGGCTGAAGGCCACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATTAAAACGAAGAAATAACAAGCAAATAGcatca                                                                                                                                                                                                                                              >  1:408385/1‑236 (MQ=255)                                   accacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCAAAACCAACGTTTCTGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                                                                                                                                                   >  1:145418/1‑265 (MQ=255)                                                           acaaggATAAGTCTTTGCCAGGTCCGGGTATTCTGCAGAAGAAAAAGCGGCACCATTGCATGTCAGGCAGCCTGTTGGCGGGGTGGATGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAACCTGCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAGTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAANAAATGACCAGAACACAGATCTACAACGTAATGCGCt                                                                                                                                                  <  1:156678/270‑1 (MQ=255)                                                                          tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAACTGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTCCAACGTAATGCGCTGAACTGTGCAGAATGc                                                                                                                                  >  1:310268/1‑275 (MQ=255)                                                                                    tggTATTCTTCAGCATAAAGAGGGGCACCATTACATTACGGCCAGCCTGTGGGAGGAGTAGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                                                                                                                                                           <  1:145972/159‑1 (MQ=255)                                                                                                      gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                                                                                                                                                                                 >  1:391635‑M2/101‑200 (MQ=255)                                                                                                         gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAAACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAGGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGca                                                                                                   <  1:11417/275‑1 (MQ=255)                                                                                                                     ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAACTGGCACCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTAATGGCTATGTACGCGTATCAACAAATGACCAGAACAAAGATCTACaa                                                                                                                                                             >  1:321322‑M2/86‑205 (MQ=255)                                                                                                                                       gctatgagaccggtgcgtcctaaggtagccggggctgcattgagtttttctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATGGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa                                                                                                                                                         <  1:172037‑M2/124‑1 (MQ=255)                                                                                                                                       gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                                                                                                                                                                                 <  1:145713‑M2/84‑1 (MQ=255)                                                                                                                                          atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                                                                                                                                                                            >  2:144859‑M2/65‑137 (MQ=255)                                                                                                                                           tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCt                                                                 >  1:259358‑M2/64‑275 (MQ=255)                                                                                                                                              aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                                                                                                                                                        <  1:144860‑M2/77‑1 (MQ=255)                                                                                                                                                           cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAACTGAAGAAATAACAAGCAAATGGCATCCTTCCTGCttttcc                                                                                                                                                                                                                                 >  1:88780/1‑97 (MQ=255)                                                                                                                                                                tgcccttggttgcatttagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCATTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGTATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGa                                            <  2:259357‑M2/233‑1 (MQ=255)                                                                                                                                                                                       gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                                                                                                                                                   >  1:303285/1‑117 (MQ=255)                                                                                                                                                                                         gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc                                                                                                                                                   >  1:276716/1‑147 (MQ=255)                                                                                                                                                                                         gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGATCGGGACATTAt                                                      >  1:375761/1‑240 (MQ=255)                                                                                                                                                                                           cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                                                                                                                                                               <  2:303284‑M2/102‑1 (MQ=255)                                                                                                                                                                                                 ccaaaccaaCGTTGATGAAAATGAAGAAATAAAAAGCAAATAGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCCATGTACGCTTATCAACAAACGACCAGAACACAGATCTACAACGTAATgcg                                                                                                                                                    <  1:391253‑M2/129‑1 (MQ=255)                                                                                                                                                                                                          cGTTTAAGAAAATGCAGACATAACAAGCGAATGCCATCATTCCTGCTTTATCCAGGGGGATTTAACTTGCGTATTGGCTATGTACGGGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAATTGTTCAGCATGCGAGCGGATTTTTGAAGACAGGATAAGGGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAGCTGCCCAGGCCATTATCGGCAGGTTACACTCAGGTTGCCTGGGATCTTGAACCGCTcggggggggggt  >  2:184747/1‑267 (MQ=255)                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                   TCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTAT  >  NC_000913/1209418‑1209893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.