| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 3746910 | 0 (0.000) | 117 (0.920) | 86/170 | 0.3 | 100% | coding (71/447 nt) | tnaB | tryptophan transporter of low affinity |
| ? | AC_000091 | 3748110 = | 0 (0.000) | coding (871/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 128 total aligned reads displayed.
CGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC > AC_000091/3746821‑3746999 | cgTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG > 1:1346721‑M1/1‑90 (MQ=255) gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGa > 2:2473828‑M1/1‑89 (MQ=255) gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGa > 1:1907086‑M1/1‑89 (MQ=255) gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGa < 2:682470‑M1/90‑2 (MQ=255) tGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGag < 2:1969860‑M1/90‑3 (MQ=255) tGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGag > 1:2952109‑M1/1‑88 (MQ=255) gggAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGaga > 2:269566‑M1/1‑87 (MQ=255) gggAGTTATCAATCTTAAACAGGGCCGCCAGATAATCGAACAACCCCAGCGTGACACCAACGAACGAACTGGCAGCCGCAAAGTAAGaga > 2:1447145‑M1/1‑87 (MQ=255) ggAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaa > 1:3298945‑M1/1‑86 (MQ=255) ggAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaa < 1:887594‑M1/90‑5 (MQ=255) gAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaac < 2:3431855‑M1/90‑6 (MQ=255) gTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacac < 1:1368383‑M1/90‑8 (MQ=255) gTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacac > 1:1970901‑M1/1‑83 (MQ=255) ttATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacacc > 1:3068621‑M1/1‑82 (MQ=255) tATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacacca < 2:1774247‑M1/90‑10 (MQ=255) aTCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccag > 1:3236294‑M1/1‑80 (MQ=255) aTCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccag < 1:2578319‑M1/90‑11 (MQ=255) aTCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAAAGAACTGGCAACAGCTAAGTTAGagaacaccag < 2:435108‑M1/90‑11 (MQ=255) cAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagca > 1:191685‑M1/1‑78 (MQ=255) aaTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcag > 1:3468540‑M1/1‑77 (MQ=255) aaTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcag < 2:2867977‑M1/90‑14 (MQ=255) aTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcagg < 1:3482199‑M1/90‑15 (MQ=255) aTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcagg > 1:670114‑M1/1‑76 (MQ=255) aTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcagg > 2:2073878‑M1/1‑76 (MQ=255) cTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggca < 2:1681816‑M1/90‑17 (MQ=255) cTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggca < 2:3088003‑M1/90‑17 (MQ=255) tAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaa < 1:2737222‑M1/90‑19 (MQ=255) aaaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaa > 2:2669896‑M1/1‑71 (MQ=255) aaaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaa > 1:1260066‑M1/1‑71 (MQ=255) aaaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaa > 2:798697‑M1/1‑71 (MQ=255) aaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaac > 1:2184535‑M1/1‑70 (MQ=255) aaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaac < 1:1479056‑M1/90‑21 (MQ=255) aCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaact < 1:2505290‑M1/90‑22 (MQ=255) cAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactc < 2:3115526‑M1/90‑23 (MQ=255) cAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactc > 1:672459‑M1/1‑68 (MQ=255) cAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactc > 1:1444644‑M1/1‑68 (MQ=255) cAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactc < 1:1024907‑M1/90‑23 (MQ=255) gTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgat < 2:1589905‑M1/90‑26 (MQ=255) ccGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataa > 1:3466569‑M1/1‑63 (MQ=255) gCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatg < 1:2890879‑M1/90‑30 (MQ=255) gCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatg < 2:3298386‑M1/90‑30 (MQ=255) gCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatg > 2:1497990‑M1/1‑61 (MQ=255) cAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgcc > 2:2549267‑M1/1‑59 (MQ=255) cAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgcc > 2:2513988‑M1/1‑59 (MQ=255) cAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgcc < 2:2937260‑M1/90‑32 (MQ=255) aGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccg < 1:726580‑M1/90‑33 (MQ=255) aGATAAGCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccg > 2:715229‑M1/1‑58 (MQ=255) aTAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtg < 2:1444428‑M1/90‑35 (MQ=255) tAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgc > 1:1087702‑M1/1‑55 (MQ=255) aaTCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggaaaaactcggtaatgccgtgct > 2:1646200‑M1/1‑54 (MQ=255) cGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtt < 2:927572‑M1/90‑40 (MQ=255) gAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgttt < 1:125719‑M1/90‑41 (MQ=255) aacaacCCCAGCGTGACACCAAAGAACGAACTGGAAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgcagtttg > 2:2997430‑M1/1‑49 (MQ=255) acaacCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttgg < 1:295117‑M1/90‑43 (MQ=255) caacCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggt < 2:875996‑M1/90‑44 (MQ=255) ccAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccga > 2:2098855‑M1/1‑42 (MQ=255) ccAGCGTGACACCAAAGAAAGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccga < 1:623700‑M1/90‑49 (MQ=255) aGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgagg > 1:1692079‑M1/1‑40 (MQ=255) gCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgagga < 2:1229‑M1/90‑52 (MQ=255) cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccttgctgtttggtgccgaggaa < 2:494180‑M1/90‑53 (MQ=255) cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaa > 1:1704986‑M1/1‑38 (MQ=255) cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaa > 2:3222368‑M1/1‑38 (MQ=255) acacCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgat > 1:523067‑M1/1‑34 (MQ=255) ccAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttc < 1:2553385‑M1/90‑60 (MQ=255) ccAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttc > 1:1768614‑M1/1‑31 (MQ=255) ccAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgatgtttggtgccgaggaacgatttc > 2:337837‑M1/1‑31 (MQ=255) cAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttca > 2:1621167‑M1/1‑30 (MQ=255) cAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttca < 1:3352844‑M1/90‑61 (MQ=255) aaaGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcac < 2:685917‑M1/90‑62 (MQ=255) aaGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgtcgtgctgtttggtgccgaggaacgatttcacc > 2:1065998‑M1/1‑28 (MQ=255) aGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca > 2:293411‑M1/1‑27 (MQ=255) gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccag > 1:168800‑M1/1‑26 (MQ=255) gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccag < 1:2811220‑M1/90‑65 (MQ=255) gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccag < 2:2098580‑M1/90‑65 (MQ=255) gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccag < 1:2216773‑M1/90‑65 (MQ=255) acgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcg > 1:1650171‑M1/1‑24 (MQ=255) acTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatc < 1:2563842‑M1/90‑71 (MQ=255) cTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatca > 1:1707968‑M1/1‑19 (MQ=255) tGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaa > 1:2132378‑M1/1‑18 (MQ=255) ggCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaataaag > 1:73716‑M1/1‑17 (MQ=255) ggCAACAGCTAAGTTAGagaacaccagcaggaaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaac < 1:1751987‑M1/90‑74 (MQ=255) cAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgt < 2:2233098‑M1/90‑76 (MQ=255) aaCAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgtt > 2:2216632‑M1/1‑14 (MQ=255) cAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgc > 2:2963150‑M1/1‑12 (MQ=255) aGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgcc < 2:648400‑M1/90‑80 (MQ=255) aGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgcc < 1:855502‑M1/90‑80 (MQ=255) cTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgc > 2:1329775‑M1/1‑9 (MQ=255) tAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcc > 2:2728020‑M1/1‑8 (MQ=255) tAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcc > 1:2261568‑M1/1‑8 (MQ=255) aGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcagcagcgaatcaacgttgccgcctg > 2:1163091‑M1/1‑6 (MQ=255) aGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctg > 2:2297540‑M1/1‑6 (MQ=255) ttAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacccgcgaatcaacgttgccgcctgag > 2:1412693‑M1/1‑4 (MQ=255) ttAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgag > 1:2833238‑M1/1‑4 (MQ=255) tAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgagg < 1:2818940‑M1/90‑88 (MQ=255) agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgagga > 1:2054573‑M1/1‑2 (MQ=255) agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgagga < 1:333272‑M1/90‑89 (MQ=255) agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgagga < 2:447485‑M1/90‑89 (MQ=255) gagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag < 1:705340‑M1/90‑90 (MQ=255) gagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag > 1:2521497‑M1/1‑1 (MQ=255) gagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag < 2:125378‑M1/90‑90 (MQ=255) | CGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC > AC_000091/3746821‑3746999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |