| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | 3748316 = | 12 (0.090) | 163 (1.220) | 108/178 | 0.0 | 93.1% | coding (665/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | AC_000091 | = 4056987 | NA (NA) | coding (388/414 nt) | yrhA | hypothetical protein | |||||
Only 100 of 303 total aligned reads displayed.
TATTCCCCATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGG > AC_000091/3748227‑3748405 | tatTCCCCATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGc < 2:547802/90‑1 (MQ=255) ttCCCCATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGt > 2:2904746/1‑90 (MQ=255) ttCCCCATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGt > 1:341566/1‑90 (MQ=255) ttCCCCATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGt < 2:751933/90‑1 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGttt > 1:140101‑M1/86‑90 (MQ=255) ccccATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAAAACCACGCTTTTGATTAACTTATCTTTGCGttt < 2:1580/90‑1 (MQ=255) ggTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAgg > 2:1698990‑M1/1‑88 (MQ=255) gTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggt < 1:289299‑M1/90‑4 (MQ=255) gTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggt < 1:3376015‑M1/90‑4 (MQ=255) tGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggta < 1:2171584‑M1/90‑5 (MQ=255) gCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAAACAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAgttaa > 2:1537171‑M1/1‑85 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaa < 2:838676‑M1/15‑1 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaa < 2:413611‑M1/15‑1 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaaa < 2:2936759‑M1/16‑1 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaaa > 1:566173‑M1/75‑90 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCaaa < 1:673363‑M1/16‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaat > 1:2722789‑M1/74‑90 (MQ=255) tAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGCTTTCCAggtaatgac > 1:230631‑M1/1‑81 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaata < 2:603448‑M1/18‑1 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaata > 1:2456167‑M1/73‑90 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaataa > 1:1683635‑M1/72‑90 (MQ=255) agagCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgact > 1:1904223‑M1/1‑80 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAaataat > 1:2290711‑M1/71‑90 (MQ=255) agCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactcc > 1:909541‑M1/1‑78 (MQ=255) agCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactcc < 1:526221‑M1/90‑13 (MQ=255) gCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactcca < 2:564357‑M1/90‑14 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCa > 1:97521‑M1/69‑90 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCa > 1:119982‑M1/69‑90 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGc < 1:1334437‑M1/25‑1 (MQ=255) agaagaGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaact < 2:2999542‑M1/90‑17 (MQ=255) gaagaGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaactt < 1:1775552‑M1/90‑18 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCt > 2:94128‑M1/65‑90 (MQ=255) agagATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttat < 1:3251252‑M1/90‑20 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTgg < 1:1174247‑M1/28‑1 (MQ=255) gagaTAAATCACCAGCGCCAGCAGCGAACCAAATACCGCGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttatt < 2:2186452‑M1/90‑21 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTggg < 1:2555112‑M1/29‑1 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGaa > 2:1357687‑M1/60‑90 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAat > 2:3293367‑M1/59‑90 (MQ=255) cctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccCGTTTTCCATAGCAAATAATCAGGCTGGGAata > 1:2976464‑M1/58‑90 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATAtt > 2:1045035‑M1/56‑90 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATAtt < 1:1831360‑M1/35‑1 (MQ=255) aaTCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagt < 1:1562378‑M1/90‑27 (MQ=255) tCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgt > 1:3005056‑M1/1‑62 (MQ=255) cACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaccttattgatagtgtt < 2:253348‑M1/90‑30 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGcc < 2:514731‑M1/38‑1 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCg > 1:1949156‑M1/52‑90 (MQ=255) gcgcCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatg < 2:2012517‑M1/90‑35 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGa < 2:1103009‑M1/43‑1 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGa < 1:1004874‑M1/43‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGaa < 2:466034‑M1/44‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGaa < 2:847419‑M1/44‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGaa > 2:1287540‑M1/47‑90 (MQ=255) gcCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgtt < 1:606498‑M1/90‑37 (MQ=255) ccAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttc < 1:1978244‑M1/90‑38 (MQ=255) agcagcGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcag > 1:2234829‑M1/1‑51 (MQ=255) agcagcGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcag < 2:1949274‑M1/90‑40 (MQ=255) agcagcGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcag < 2:3480297‑M1/90‑40 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCa > 1:1036879‑M1/43‑90 (MQ=255) cagaGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagat < 2:3226031‑M1/90‑42 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCaaa > 2:3153029‑M1/41‑90 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAAt > 1:137065‑M1/40‑90 (MQ=255) cGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataat > 1:2372072‑M1/1‑46 (MQ=255) aCCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcc > 1:2503567‑M1/1‑43 (MQ=255) aCCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcc > 2:1929175‑M1/1‑43 (MQ=255) catacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGcc < 1:1449393‑M1/57‑1 (MQ=255) cAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccg > 2:2133724‑M1/1‑41 (MQ=255) tacactaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGCATATTGCCGTGGAAACCAAATGACGCCAg > 2:1170325‑M1/32‑90 (MQ=255) aaTACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:2500785‑M1/1‑39 (MQ=255) actaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGaca < 2:2701382‑M1/62‑1 (MQ=255) ctaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGacac > 1:1066531‑M1/28‑90 (MQ=255) ctaaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGacac < 2:2503166‑M1/63‑1 (MQ=255) ccACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact > 1:99172‑M1/1‑35 (MQ=255) cACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt < 2:2430381‑M1/90‑57 (MQ=255) cACGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt > 2:3173022‑M1/1‑34 (MQ=255) aaatcagtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGacacac < 2:2087820‑M1/65‑1 (MQ=255) aCGCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt < 2:2332014‑M1/90‑58 (MQ=255) gCTTTTGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt < 1:2800691‑M1/90‑60 (MQ=255) cTTTTGATTAACTTATCTTTGCGGTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc > 2:1116800‑M1/1‑30 (MQ=255) ttttGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca > 1:784219‑M1/1‑29 (MQ=255) gtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAATCAAATGACGCCAGACACACCGGCaa < 2:1009922‑M1/71‑1 (MQ=255) gtaagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCaa > 1:2636865‑M1/20‑90 (MQ=255) taagttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCaaa < 1:1507109‑M1/72‑1 (MQ=255) tGATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:3129404‑M1/1‑26 (MQ=255) gATTAACTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca > 2:787613‑M1/1‑25 (MQ=255) gttggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGcc > 1:27054‑M1/16‑90 (MQ=255) ggcagcatcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATa > 1:3470108‑M1/13‑90 (MQ=255) aCTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc > 2:1423433‑M1/1‑20 (MQ=255) cTTATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca > 2:729655‑M1/1‑19 (MQ=255) tATCTTTGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc > 2:3403167‑M1/1‑17 (MQ=255) atcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGata < 2:3436465‑M1/84‑1 (MQ=255) atcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGata < 1:1634633‑M1/84‑1 (MQ=255) tcaccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGatat < 1:2781514‑M1/85‑1 (MQ=255) tttGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgagtttgtcatgcagctccaccgatt > 2:259093‑M1/1‑13 (MQ=255) tttGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt > 1:3192251‑M1/1‑13 (MQ=255) caccCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGAtata < 1:2939976‑M1/86‑1 (MQ=255) ttGCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt > 1:1649864‑M1/1‑12 (MQ=255) gCGTTTTCCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:1899043‑M1/1‑10 (MQ=255) cCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACgg > 2:2771976‑M1/2‑90 (MQ=255) cCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACgg < 1:415148‑M1/89‑1 (MQ=255) cGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACggg > 2:1660841/1‑90 (MQ=255) | TATTCCCCATGGTGCAATAGAGCCAGAAGAGATAAATCACCAGCGCCAGCAGCGAACCAAATACCACGCTTTTGATTAACTTATCTTTGCGTTTTCCATAGCAAATAATCAGGCTGGGAATATTGCCGTGGAAACCAAATGACGCCAGACACACCGGCAAAGCCATAAAGATATACGGG > AC_000091/3748227‑3748405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |