| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 3750590 | 0 (0.000) | 162 (1.270) | 93/170 | 0.1 | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AC_000091 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 172 total aligned reads displayed.
TTTATTTTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC > AC_000091/3750501‑3750679 | tttatttTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA > 1:2814480‑M1/1‑90 (MQ=255) ttatttTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:1107417‑M1/90‑2 (MQ=255) ttatttTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:3339812‑M1/90‑2 (MQ=255) ttatttTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa > 1:1574518‑M1/1‑89 (MQ=255) atttTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:2542540‑M1/1‑87 (MQ=255) atttTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 2:784673‑M1/1‑87 (MQ=255) ttAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag < 2:1986732‑M1/90‑7 (MQ=255) aaTTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagta < 2:2598354‑M1/90‑9 (MQ=255) aaTTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagta < 1:181876‑M1/90‑9 (MQ=255) aaTTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATGCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagta < 2:1745359‑M1/90‑9 (MQ=255) ttACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATCTGCAAGCACCATCTTTCACTAAaacaagtaaa < 2:1559424‑M1/90‑11 (MQ=255) ttACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa < 1:1297078‑M1/90‑11 (MQ=255) ttACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa < 1:3293556‑M1/90‑11 (MQ=255) tACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 2:1560526‑M1/1‑79 (MQ=255) tACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 2:3317641‑M1/1‑79 (MQ=255) aCAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:1397554‑M1/90‑13 (MQ=255) aCAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 2:171849‑M1/90‑13 (MQ=255) cAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCACGCACCATCATTTACTAAaacaagtaaataa < 2:2092118‑M1/90‑14 (MQ=255) cAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataa > 1:767332‑M1/1‑77 (MQ=255) aGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCACCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaa > 2:1807166‑M1/1‑76 (MQ=255) gATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:3428074‑M1/1‑73 (MQ=255) gATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 2:2660687‑M1/1‑73 (MQ=255) tCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgaga < 2:415425‑M1/90‑20 (MQ=255) tCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGAACCATAATTTATTAAaacaagtaaataaacgaga > 1:2123740‑M1/1‑71 (MQ=255) cccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagag < 2:742781‑M1/90‑21 (MQ=255) cTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagat < 2:1826941‑M1/90‑23 (MQ=255) tgtgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatg < 1:2956329‑M1/90‑24 (MQ=255) gtgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatga < 2:1062545‑M1/90‑25 (MQ=255) tgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCCAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 2:1137018‑M1/90‑26 (MQ=255) gAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 2:1358184‑M1/1‑64 (MQ=255) gAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc < 2:2158517‑M1/90‑27 (MQ=255) gAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc < 1:1944661‑M1/90‑27 (MQ=255) atatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctt > 1:3414537‑M1/1‑62 (MQ=255) atatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctt > 1:2598457‑M1/1‑62 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt < 2:2367985‑M1/90‑30 (MQ=255) atTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg < 1:2137320‑M1/90‑31 (MQ=255) atTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg > 1:794576‑M1/1‑60 (MQ=255) tACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgca > 2:2494915‑M1/1‑58 (MQ=255) tACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgca > 2:3317229‑M1/1‑58 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 2:1846217‑M1/90‑34 (MQ=255) tCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag < 2:708702‑M1/90‑37 (MQ=255) tCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag < 2:3274198‑M1/90‑37 (MQ=255) tCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag > 2:1548925‑M1/1‑54 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg < 2:512969‑M1/90‑38 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:2285122‑M1/1‑53 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg < 1:301289‑M1/90‑38 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggc > 2:1881730‑M1/1‑52 (MQ=255) tataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaa > 1:1182935‑M1/1‑49 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 2:2926631‑M1/1‑48 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:278652‑M1/1‑48 (MQ=255) cggatTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta > 2:191592‑M1/3‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta < 1:608693‑M1/90‑46 (MQ=255) cGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaa > 2:467163‑M1/1‑44 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaag > 1:586672‑M1/1‑43 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaag > 1:1192815‑M1/1‑43 (MQ=255) aTTAATTCTCTAGATATATCTGCAAGCACCATCATTTACTAAaaaaagtaaataaacgagagatgacctttgcaaaaggcaaaattaaga < 1:1872593‑M1/90‑49 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaaga < 2:3127341‑M1/90‑49 (MQ=255) tAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 2:2374089‑M1/1‑40 (MQ=255) aaTTCACCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatat > 2:938351‑M1/1‑39 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatata > 1:1324905‑M1/1‑38 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag < 1:2364355‑M1/90‑54 (MQ=255) tCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagc < 1:1017443‑M1/90‑55 (MQ=255) tCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagc < 1:641691‑M1/90‑55 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagca > 2:199260‑M1/1‑35 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaaataaataaacgagagatgacctttgcaaaaggcaaaattaagatatagca > 1:2500374‑M1/1‑35 (MQ=255) gCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatagagcaa < 1:193556‑M1/90‑57 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaa < 2:2286992‑M1/90‑58 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaa > 1:1470883‑M1/1‑33 (MQ=255) tatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaat < 2:3371371‑M1/90‑63 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaata < 2:570442‑M1/90‑64 (MQ=255) tatatGCAAGCACGATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatag > 2:3067802‑M1/1‑26 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatag > 2:1202262‑M1/1‑26 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatag < 2:3101433‑M1/90‑65 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagat < 2:825890‑M1/90‑67 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 2:664875‑M1/1‑20 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca < 1:1153746‑M1/90‑71 (MQ=255) aaGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacat > 2:2476062‑M1/1‑19 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacatt < 1:3289797‑M1/90‑73 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacatt < 2:478389‑M1/90‑73 (MQ=255) cttcatcctttaCTAAaacaagtaaagaaacgagagatgacctttgcaaaaggcaaaattaagatatatcataccaatagatcgcattga < 2:220683‑M1/87‑75 (MQ=255) cACCATTATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattga < 2:2884072‑M1/90‑75 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattga > 2:1199633‑M1/1‑16 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattga > 2:619882‑M1/1‑16 (MQ=255) aCCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaa > 1:3146386‑M1/1‑15 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatct > 1:3031141‑M1/1‑12 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatct > 2:1871449‑M1/1‑12 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatcta > 1:1887672‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatcta < 1:2935219‑M1/90‑80 (MQ=255) catTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaa > 1:490991‑M1/1‑10 (MQ=255) catTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaa > 2:1434705‑M1/1‑10 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaat > 1:1629085‑M1/1‑9 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcg < 2:183844‑M1/90‑84 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcg < 2:1281841‑M1/90‑84 (MQ=255) tACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcgg > 1:2550558‑M1/1‑6 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcggttt > 2:2547540‑M1/1‑3 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcggttt > 1:852573‑M1/1‑3 (MQ=255) aaaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcggtttg < 2:3010416‑M1/90‑89 (MQ=255) aaaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcggtttg > 2:1467978‑M1/1‑2 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcggtttgg > 1:2075011‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcacattgaatctaatcggtttgg < 2:2227314‑M1/90‑90 (MQ=255) | TTTATTTTAATTACAGTGATCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC > AC_000091/3750501‑3750679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |