| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 3750590 | 0 (0.000) | 162 (1.270) | 93/170 | 0.1 | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AC_000091 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 171 total aligned reads displayed.
TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTGG > AC_000091/3751701‑3751878 | ttattttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaa < 1:1107417‑M2/1‑1 (MQ=255)ttattttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaa > 1:1574518‑M2/90‑90 (MQ=255) tattttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaaa > 1:652489‑M2/89‑90 (MQ=255) attttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 2:784673‑M2/88‑90 (MQ=255) attttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 1:2542540‑M2/88‑90 (MQ=255) ttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAg < 2:1986732‑M2/6‑1 (MQ=255) taattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGt < 1:948976‑M2/7‑1 (MQ=255) aattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGta < 1:181876‑M2/8‑1 (MQ=255) aattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGta < 2:2042371‑M2/8‑1 (MQ=255) aattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGta < 2:2598354‑M2/8‑1 (MQ=255) aattacagtgatccctgtgaatattacatctgctataccgattaatgcgccagatatatatgcaagcaccatcatttactaaAACAAGta < 2:1745359‑M2/8‑1 (MQ=255) ttacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatctgcaagcaccatctttcactaaAACAAGtaaa < 2:1559424‑M2/10‑1 (MQ=255) ttacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaa < 1:1297078‑M2/10‑1 (MQ=255) cagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcacgcaccatcatttactaaAACAAGtaaataa < 2:2092118‑M2/13‑1 (MQ=255) agtgatccctgtgaatattacatctgctataccgattaattcaccagatatatatgcaagcaccatcatttactaaAACAAGtaaataaa > 2:1807166‑M2/77‑90 (MQ=255) gatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 2:2660687‑M2/74‑90 (MQ=255) gatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:3334137‑M2/74‑90 (MQ=255) atccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgag < 2:3333783‑M2/18‑1 (MQ=255) tccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga > 2:1836111‑M2/72‑90 (MQ=255) tccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 2:415425‑M2/19‑1 (MQ=255) tccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 2:2420613‑M2/19‑1 (MQ=255) tccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagaaccataatttattaaAACAAGTAAATAAACgaga > 1:2123740‑M2/72‑90 (MQ=255) ccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgagag < 2:742781‑M2/20‑1 (MQ=255) ccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgagag > 2:1886846‑M2/71‑90 (MQ=255) tgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATg < 1:2956329‑M2/23‑1 (MQ=255) tgaatattacatctgctataccgattaattcgccagatatatatgccagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc < 2:1137018‑M2/25‑1 (MQ=255) gaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 2:1358184‑M2/65‑90 (MQ=255) gaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc < 1:1944661‑M2/26‑1 (MQ=255) gaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc < 2:2158517‑M2/26‑1 (MQ=255) aatattacatctgctataccgattaattcgccagatatatatgcaagccccatcatttactaaAACAAGTAAATAAACGAGAGATGACCt < 1:518172‑M2/27‑1 (MQ=255) aatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCt < 2:1268198‑M2/27‑1 (MQ=255) atattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCtt > 1:3414537‑M2/63‑90 (MQ=255) atattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCtt > 1:2598457‑M2/63‑90 (MQ=255) tattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCttt < 2:2367985‑M2/29‑1 (MQ=255) tattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCttt < 2:1471853‑M2/29‑1 (MQ=255) attacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTg > 1:794576‑M2/61‑90 (MQ=255) attacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTg < 1:2137320‑M2/30‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGc > 2:3010145‑M2/60‑90 (MQ=255) tacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCa > 2:2494915‑M2/59‑90 (MQ=255) tacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCa > 2:3317229‑M2/59‑90 (MQ=255) tacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCa < 2:636050‑M2/32‑1 (MQ=255) acatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaa < 2:1846217‑M2/33‑1 (MQ=255) tctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAg < 2:708702‑M2/36‑1 (MQ=255) tctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAg < 2:3274198‑M2/36‑1 (MQ=255) tctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAg > 2:1548925‑M2/55‑90 (MQ=255) ctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg > 1:2285122‑M2/54‑90 (MQ=255) ctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg < 2:512969‑M2/37‑1 (MQ=255) gctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCa < 1:2749841‑M2/39‑1 (MQ=255) tataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaaa > 1:1182935‑M2/50‑90 (MQ=255) accgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAtt > 1:78925‑M2/47‑90 (MQ=255) cggattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTa > 2:191592‑M2/46‑90 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTa < 1:608693‑M2/45‑1 (MQ=255) cgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTaa > 2:467163‑M2/45‑90 (MQ=255) gattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAg > 1:586672‑M2/44‑90 (MQ=255) gattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAg > 1:1192815‑M2/44‑90 (MQ=255) attaattctctagatatatctgcaagcaccatcatttactaaAAAAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:1872593‑M2/48‑1 (MQ=255) attaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa > 1:1933718‑M2/43‑90 (MQ=255) attaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 2:3127341‑M2/48‑1 (MQ=255) ttaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGat < 1:3085699‑M2/49‑1 (MQ=255) taattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata < 1:3287399‑M2/50‑1 (MQ=255) aattcaccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGatat > 2:938351‑M2/40‑90 (MQ=255) attcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGAtata > 1:1324905‑M2/39‑90 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg < 1:2909807‑M2/53‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg < 1:2364355‑M2/53‑1 (MQ=255) tcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGc < 1:1017443‑M2/54‑1 (MQ=255) cgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGca > 2:1696407‑M2/36‑90 (MQ=255) ccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaa > 1:1470883‑M2/34‑90 (MQ=255) ccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaa < 2:2286992‑M2/57‑1 (MQ=255) tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAAt < 2:3371371‑M2/62‑1 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATa < 2:570442‑M2/63‑1 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATa > 1:1378320‑M2/28‑90 (MQ=255) tatatgcaagcacgatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAg > 2:3067802‑M2/27‑90 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAg < 2:3101433‑M2/64‑1 (MQ=255) tatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAt < 2:825890‑M2/66‑1 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATcaca > 2:664875‑M2/21‑90 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATcaca < 1:1153746‑M2/70‑1 (MQ=255) aagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACAt > 2:2476062‑M2/20‑90 (MQ=255) agcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACAtt < 2:478389‑M2/72‑1 (MQ=255) agcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACAtt < 1:3289797‑M2/72‑1 (MQ=255) gcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTg < 2:1126662‑M2/73‑1 (MQ=255) caccattatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGa < 2:2884072‑M2/74‑1 (MQ=255) caccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGa > 2:1199633‑M2/17‑90 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAANNGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGaa > 2:1728558‑M2/16‑90 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGaa < 2:2217288‑M2/75‑1 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGaa < 2:1288180‑M2/75‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCt > 1:3014307‑M2/13‑90 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTa < 1:439590‑M2/79‑1 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTa > 1:1887672‑M2/12‑90 (MQ=255) catttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTaa > 1:3396476‑M2/11‑90 (MQ=255) catttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTaa > 2:1434705‑M2/11‑90 (MQ=255) atttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAAt > 1:1629085‑M2/10‑90 (MQ=255) ttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCg < 2:183844‑M2/83‑1 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCgg > 1:2550558‑M2/7‑90 (MQ=255) taaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGttt < 1:2941477‑M2/87‑1 (MQ=255) taaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGttt > 2:2547540‑M2/4‑90 (MQ=255) aaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTg < 2:3010416‑M2/88‑1 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTgg > 1:2075011‑M2/2‑90 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTgg > 1:2436229‑M2/2‑90 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTgg < 2:2227314‑M2/89‑1 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTgg > 2:18718‑M2/2‑90 (MQ=255) | TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTGG > AC_000091/3751701‑3751878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |