BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AC_000091	4056221 =	NA (NA)	155 (1.170)	99/176	0.1	92.3%	intergenic (‑565/+14)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'
*	?	AC_000091	4370787 =	13 (0.100)	155 (1.170)	99/176	0.1	92.3%	coding (479/1116 nt)	dcuA	C4‑dicarboxylate antiporter

Only 100 of 144 total aligned reads displayed.

TAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAC  >  AC_000091/4056133‑4056304

tAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                                                    <  1:1190075/90‑1 (MQ=255)

  aGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTaa                                                                                  <  2:2788174/90‑1 (MQ=255)

   gAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAAt                                                                                 <  1:1075207/90‑1 (MQ=255)

    aaTCAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATg                                                                                <  2:2845815/90‑1 (MQ=255)

     aTGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                                               <  2:2920595/90‑1 (MQ=255)

     aTGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                                               >  1:1719345/1‑90 (MQ=255)

      tGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGAc                                                                              >  2:428404/1‑90 (MQ=255)

       gAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACt                                                                             <  2:1046925/90‑1 (MQ=255)

       gAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACt                                                                             >  1:1348698/1‑90 (MQ=255)

        aaGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTc                                                                            <  1:2249820/90‑1 (MQ=255)

         agagAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTcc                                                                           <  1:2802736/90‑1 (MQ=255)

         agagAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTcc                                                                           <  2:3387271/90‑1 (MQ=255)

          gagaAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCa                                                                          <  2:1242109/90‑1 (MQ=255)

          gagaAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCa                                                                          <  1:1750411/90‑1 (MQ=255)

            gaAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAAc                                                                        >  1:398557/1‑90 (MQ=255)

             aaaTCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACt                                                                       >  2:2864162/1‑90 (MQ=255)

              aaTCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACtt                                                                      >  2:3104899/1‑90 (MQ=255)

              aaTCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACtt                                                                      <  2:3199202/90‑1 (MQ=255)

                  aCTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTg                                                                  <  1:2424368/90‑1 (MQ=255)

                    tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                                                <  2:2063027/90‑1 (MQ=255)

                    tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                                                <  1:1785926/90‑1 (MQ=255)

                    tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                                                >  2:770088/1‑90 (MQ=255)

                      aaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAg                                                              <  1:2064497/90‑1 (MQ=255)

                      aaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAg                                                              >  1:1087048/1‑90 (MQ=255)

                       aCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAgt                                                             >  2:1751149/1‑90 (MQ=255)

                        cGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAgtg                                                            >  1:995119/1‑90 (MQ=255)

                        cGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAgtg                                                            >  2:2832430/1‑90 (MQ=255)

                         gAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAgtgt                                                           >  2:1120444/1‑90 (MQ=255)

                           aCTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGttt                                                         <  1:2157115/90‑1 (MQ=255)

                            cttaaTATATTTCCTGTGCGAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGtttt                                                        <  2:21287/87‑1 (MQ=37)

                             tGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                       >  2:2612129/1‑90 (MQ=255)

                              gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                      >  1:1489315/1‑90 (MQ=255)

                              gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                      <  2:1585796/90‑1 (MQ=255)

                               aaTATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                     <  1:3162536/90‑1 (MQ=255)

                                atatatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                    >  2:3378532/1‑90 (MQ=255)

                                 tatatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                   <  1:1849837/90‑1 (MQ=255)

                                 tatatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                   <  1:2100240/90‑1 (MQ=255)

                                  atatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                  <  2:743177/90‑1 (MQ=255)

                                   tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                 <  1:1185198/90‑1 (MQ=255)

                                   tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                 <  1:1748375/90‑1 (MQ=255)

                                   tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                 >  1:3192967/1‑90 (MQ=255)

                                    atTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                <  1:653078/90‑1 (MQ=255)

                                       ttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                                             >  2:2915577/1‑90 (MQ=255)

                                        tCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                            >  2:969049/1‑90 (MQ=255)

                                        tCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                            >  1:221926/1‑90 (MQ=255)

                                         cTGTGCCAATATTATCTCTAATTTCAAAGAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                           >  2:2200393/1‑90 (MQ=255)

                                         cTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCACCTTATTGATAGTGTTTTATGTTCAGATAAt                                           <  1:2747516/90‑1 (MQ=255)

                                          tgtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                          <  2:1755505/90‑1 (MQ=255)

                                           gtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc                                         <  1:2536747/90‑1 (MQ=255)

                                           gtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc                                         >  1:1382369/1‑90 (MQ=255)

                                            tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        >  1:2412132/1‑90 (MQ=255)

                                            tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        >  2:851566/1‑90 (MQ=255)

                                            tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        >  1:2184334/1‑90 (MQ=255)

                                            tgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                        <  1:3444610/90‑1 (MQ=255)

                                              ccAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg                                      >  1:3291412/1‑90 (MQ=255)

                                                aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    <  1:597550/90‑1 (MQ=255)

                                                aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    <  1:1668222/90‑1 (MQ=255)

                                                aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                    >  2:2575735/1‑90 (MQ=255)

                                                 atatTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                   >  1:2330850/1‑90 (MQ=255)

                                                  tattatCTCTAATTTCAAAAACGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                  <  2:2107360/90‑1 (MQ=255)

                                                  tattatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                  >  1:3151574/1‑90 (MQ=255)

                                                     tatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                               >  2:1557648/1‑90 (MQ=255)

                                                       tctcTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                             <  2:1869427/90‑1 (MQ=255)

                                                       tctcTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                             >  1:2741197/1‑90 (MQ=255)

                                                       tctcTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                             >  2:2661089/1‑90 (MQ=255)

                                                        ctctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTCTTTTATGTTCAGATAATGCCCGATGACTTTGt                            <  2:3160849/90‑1 (MQ=255)

                                                         tctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc                           >  1:3010786/1‑90 (MQ=255)

                                                          ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                          >  2:2385705/1‑90 (MQ=255)

                                                          ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                          <  2:3311634/90‑1 (MQ=255)

                                                          ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                          >  2:3258919/1‑90 (MQ=255)

                                                           tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                         >  1:2543160/1‑90 (MQ=255)

                                                           tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                         >  1:3000815/1‑90 (MQ=255)

                                                            naTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGANNNTNTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                        >  2:895519/2‑90 (MQ=255)

                                                            aaTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                        >  2:349268/1‑90 (MQ=255)

                                                            aaTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                        >  2:170449/1‑90 (MQ=255)

                                                             aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                       >  1:15527/1‑90 (MQ=255)

                                                             aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                       >  2:3423796/1‑90 (MQ=255)

                                                              tttCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                      <  2:1141954/90‑1 (MQ=255)

                                                                 cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                   >  2:2974448/1‑90 (MQ=255)

                                                                 cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                   >  2:3195037/1‑90 (MQ=255)

                                                                  aaaaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                  >  1:1848347/1‑90 (MQ=255)

                                                                  aaaaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                  >  1:1309638/1‑90 (MQ=255)

                                                                   aaaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc                 >  2:1449591/1‑90 (MQ=255)

                                                                    aaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                >  2:589755/1‑90 (MQ=255)

                                                                     aaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc               <  2:1863901/90‑1 (MQ=255)

                                                                     aaaGTTACTTTTAATGTCGGTAATGACTCCAACATATTGATAGTGTTTTATGTTCAAATAATGCCCGATGACTTTGTCATGCAGCTCCAc               <  2:2536023/90‑1 (MQ=255)

                                                                       aGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg             >  1:348358/1‑90 (MQ=255)

                                                                       aGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg             <  2:2448575/90‑1 (MQ=255)

                                                                       aGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATAACTTTGTCATGCAGCTCCACCg             >  1:367139/1‑90 (MQ=255)

                                                                         ttACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt           <  1:1781427/90‑1 (MQ=255)

                                                                            cTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt        <  1:1276546/90‑1 (MQ=39)

                                                                            cTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt        <  1:1317789/90‑1 (MQ=39)

                                                                            cTTTTAATGTCGGTAATGACTCCAACTTATTGATAGCGTTTTATGTTCAGATAATGCCCGATAACTTTGCCATGCGGCTCCACCGCtttt        >  2:2424275/1‑90 (MQ=14)

                                                                             ttttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg       >  1:2388695/1‑90 (MQ=38)

                                                                             ttttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg       >  1:873240/1‑90 (MQ=38)

                                                                               ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag     >  2:3342970/1‑90 (MQ=35)

                                                                               ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag     <  2:794674/90‑1 (MQ=35)

                                                                                 aaTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa   <  1:1020201/90‑1 (MQ=32)

                                                                                 aaTGTCGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTATGTCATGCAGCTCCACCGATTTTGAGaa   >  2:2483334/1‑90 (MQ=12)

                                                                                  aTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc  <  2:1452544/90‑1 (MQ=31)

TAAGAATGAAGAGAAATCACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAC  >  AC_000091/4056133‑4056304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.