| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | 4056221 = | NA (NA) | 155 (1.170) | 99/176 | 0.1 | 92.3% | intergenic (‑565/+14) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' |
| ? | AC_000091 | 4370787 = | 13 (0.100) | coding (479/1116 nt) | dcuA | C4‑dicarboxylate antiporter | |||||
Only 100 of 299 total aligned reads displayed.
CAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTG > AC_000091/4370698‑4370876 | ctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc < 2:2567267‑M2/1‑1 (MQ=255)ctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc < 2:655173‑M2/1‑1 (MQ=255)ctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc < 2:2756501‑M2/1‑1 (MQ=255)ctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc < 2:1135578‑M2/1‑1 (MQ=255)ctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc > 1:313274‑M2/90‑90 (MQ=255)ctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc > 1:1607725‑M2/90‑90 (MQ=255)cAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCAc < 1:3231903/90‑1 (MQ=255) tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccc < 1:542232‑M2/2‑1 (MQ=255) aaCCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCAcc < 2:2643104/90‑1 (MQ=255) gtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCg > 2:2360429‑M2/88‑90 (MQ=255) gtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCg > 2:1834131‑M2/88‑90 (MQ=255) gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCagac < 2:1030452‑M2/6‑2 (MQ=255) gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgat > 1:2168883‑M2/85‑90 (MQ=255) gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgat > 2:2586929‑M2/85‑90 (MQ=255) gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagctggagtcattacCCGgat < 2:2446543‑M2/6‑1 (MQ=255) cccATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGgatttg < 1:1892925/90‑1 (MQ=255) cccATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGgatttg < 2:1063962/90‑1 (MQ=255) tcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttga < 1:1647652‑M2/10‑1 (MQ=255) aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttgatt < 1:2910173‑M2/12‑1 (MQ=255) tGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtg < 1:1568176‑M2/90‑5 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGgatttgattt < 1:365965‑M2/13‑1 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTc < 2:796447‑M2/14‑1 (MQ=255) cTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgat < 2:1999784‑M2/90‑7 (MQ=255) cggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAAt > 2:1496805‑M2/74‑90 (MQ=255) ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATc > 2:1868691‑M2/73‑90 (MQ=255) ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATc < 1:883328‑M2/18‑1 (MQ=255) gtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCt < 1:2428087‑M2/19‑1 (MQ=255) gCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgc < 2:3011557‑M2/90‑12 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGc > 1:2654236‑M2/70‑90 (MQ=255) tGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgcca < 2:2205547‑M2/90‑14 (MQ=255) gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCt < 2:142874‑M2/22‑1 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagccattacCCGGATTTGATTTCAATCTGCTTTTc > 2:3038765‑M2/65‑90 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCa > 2:534120‑M2/64‑90 (MQ=255) atgatTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaactta > 2:3432832‑M2/1‑72 (MQ=255) gatTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttact < 1:1340562‑M2/90‑21 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCAcc < 2:3352804‑M2/29‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCAcc < 2:3083183‑M2/29‑1 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACcg < 2:2683525‑M2/30‑1 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACcg > 1:3311211‑M2/61‑90 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACcgcg > 2:451536‑M2/59‑90 (MQ=255) aTAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgattta > 1:727972‑M2/1‑64 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGtt < 1:767763‑M2/37‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCa > 1:251288‑M2/52‑90 (MQ=255) tAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgta < 1:2785723‑M2/90‑32 (MQ=255) tcgggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAAc > 1:2209493‑M2/50‑90 (MQ=255) aaCCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtat < 2:2959888‑M2/90‑33 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAg < 2:1693756‑M2/44‑1 (MQ=255) cGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatgg > 2:1239290‑M2/1‑53 (MQ=255) gCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggt < 1:1007118‑M2/90‑39 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCctct < 2:2870362‑M2/51‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCctct > 2:911236‑M2/40‑90 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCctct > 1:1128526‑M2/40‑90 (MQ=255) aCTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgttt > 1:1743491‑M2/1‑48 (MQ=255) ctgaacataaaacactatcaataagttggagtcattccCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCtt < 2:357637‑M2/52‑1 (MQ=255) ctgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCtt > 1:3048981‑M2/39‑90 (MQ=255) cTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttt > 1:829757‑M2/1‑47 (MQ=255) tgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTc > 1:2268574‑M2/38‑90 (MQ=255) tgaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTc > 1:2552774‑M2/38‑90 (MQ=255) tACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 2:1190111‑M2/90‑45 (MQ=255) gaacataaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCGTcc > 2:825697‑M2/37‑90 (MQ=255) gCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag > 2:2824275‑M2/1‑43 (MQ=255) gCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag > 1:3389241‑M2/1‑43 (MQ=255) taaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACg > 1:128597‑M2/32‑90 (MQ=255) cagcagGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg < 2:1085934‑M2/90‑51 (MQ=255) agcagGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc > 1:3435061‑M2/1‑39 (MQ=255) aaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGc > 1:1235605‑M2/31‑90 (MQ=255) aaaacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGc > 1:2676769‑M2/31‑90 (MQ=255) gcagGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 2:692209‑M2/1‑38 (MQ=255) aacactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCtt < 2:3282144‑M2/62‑1 (MQ=255) aacactatcaataagttggagtcattaaCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCtt > 2:2421064‑M2/29‑90 (MQ=255) agGAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:1839620‑M2/1‑36 (MQ=255) ggAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcca > 1:3099015‑M2/1‑35 (MQ=255) cactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGc < 2:1723461‑M2/64‑1 (MQ=255) cactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGc > 1:1420177‑M2/27‑90 (MQ=255) cactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGc > 2:2997901‑M2/27‑90 (MQ=255) cactatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGc < 1:2036399‑M2/64‑1 (MQ=255) gAACAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag < 2:1255133‑M2/90‑57 (MQ=255) actatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCg > 1:526583‑M2/26‑90 (MQ=255) tatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGAt > 1:2303366‑M2/24‑90 (MQ=255) tatcaataagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGAt > 2:1591455‑M2/24‑90 (MQ=255) aCAGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg > 2:1543110‑M2/1‑32 (MQ=255) aGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 2:519702‑M2/90‑61 (MQ=255) aGCCAGACGGACGTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 1:1527654‑M2/90‑61 (MQ=255) taagttggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCg < 1:1304738‑M2/73‑1 (MQ=255) gacggacgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagttgctccagtggcttttt < 2:3221651‑M2/90‑66 (MQ=255) cggacgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaagtgctccagtggcttctgtt < 2:2094766‑M2/90‑68 (MQ=255) ggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGt > 1:790759‑M2/12‑90 (MQ=255) ggagtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGt < 1:2946866‑M2/79‑1 (MQ=255) cgTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 1:1055020‑M2/90‑72 (MQ=255) gTTTTTGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat < 2:2023400‑M2/90‑73 (MQ=255) agtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCa < 2:1937681‑M2/81‑1 (MQ=255) agtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCa < 1:1970411‑M2/81‑1 (MQ=255) gtcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCag > 1:2377261‑M2/9‑90 (MQ=255) ttttGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca > 1:1712837‑M2/1‑16 (MQ=255) tcattacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCaga > 1:2596652‑M2/8‑90 (MQ=255) tttGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcag > 1:454244‑M2/1‑15 (MQ=255) ttGCACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc < 1:2135009‑M2/90‑77 (MQ=255) attacCCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCagaga > 2:3147985‑M2/6‑90 (MQ=255) cACCGGATTTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt > 2:128193‑M2/1‑11 (MQ=255) CCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTg < 1:138915‑M2/90‑1 (MQ=255) | CAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGCGCAGTTCAACCAGGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGAGTTTG > AC_000091/4370698‑4370876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |