Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AC_000091	3690506–3690766	3693239–3692694	1929–2734	70 [68]	[67] 72	[rrlC]–[gltU]	[rrlC],[gltU]

AATGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACC  >  AC_000091/3690416‑3690542                                                                                          |                                      aaTGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGaa                                       <  2:1107894/90‑1 (MQ=33) aaTGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGaa                                       >  1:540976/1‑90 (MQ=35)  aTGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAAc                                      >  2:1652519/1‑90 (MQ=33)  aTGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAAc                                      >  2:192853/1‑90 (MQ=35)  aTGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAAc                                      >  2:3462609/1‑90 (MQ=35)    ggCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAActc                                    <  1:486002/90‑1 (MQ=33)      cGAACAGCCATCCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCtt                                  <  1:1344097/90‑1 (MQ=18)      cGAACAGCCATCCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCtt                                  <  2:2565563/90‑1 (MQ=18)      cGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCtt                                  <  2:2838451/90‑1 (MQ=33)      cGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCtt                                  <  1:581777/90‑1 (MQ=33)      cGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCtt                                  <  1:3420331/90‑1 (MQ=33)      cGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCtt                                  >  1:2123773/1‑90 (MQ=35)       gAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTg                                 <  1:878914/90‑1 (MQ=33)       gAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTg                                 <  2:770974/90‑1 (MQ=33)        aaCAGCCATCCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTgg                                <  1:928675/90‑1 (MQ=18)        aaCAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTgg                                <  2:1497491/90‑1 (MQ=33)        aaCAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTgg                                <  1:537478/90‑1 (MQ=33)        aaCAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTgg                                <  2:781190/90‑1 (MQ=33)        aaCAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTgg                                >  1:796092/1‑90 (MQ=35)         aCAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTggg                               <  1:1564240/90‑1 (MQ=33)         aCAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTggg                               >  2:161815/1‑90 (MQ=33)          cAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGc                              >  2:1151384/1‑90 (MQ=33)          cAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGc                              <  2:564195/90‑1 (MQ=33)          cAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGc                              >  2:1611859/1‑90 (MQ=33)           aGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGACAAACACCGCCGTCGATATGAACTCTTGGGCg                             <  2:3282560/90‑1 (MQ=18)            gCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCgg                            >  1:2238408/1‑90 (MQ=35)             ccATTCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGt                           <  2:226544/90‑1 (MQ=18)             ccATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGt                           <  2:2138671/90‑1 (MQ=33)               aTACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTAt                         <  2:3332933/90‑1 (MQ=33)                tACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATc                        >  2:3279309/1‑90 (MQ=35)                 aCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCa                       <  2:1566097/90‑1 (MQ=33)                 aCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCa                       >  2:1491209/1‑90 (MQ=35)                 aCCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCCCCGTCGATATGAACGCTTGGGCGGTATCa                       >  2:1600269/1‑90 (MQ=255)                  cccTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAg                      <  2:240897/90‑1 (MQ=33)                  cccTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAg                      >  1:1057896/1‑90 (MQ=35)                  cccTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAg                      <  2:3066406/90‑1 (MQ=33)                  cccTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAg                      <  2:6898/90‑1 (MQ=33)                   ccTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGc                     <  1:2703879/90‑1 (MQ=33)                    cTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGcc                    <  2:2778875/90‑1 (MQ=33)                    cTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGcc                    <  2:3153931/90‑1 (MQ=33)                    cTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGcc                    >  1:82174/1‑90 (MQ=35)                    cTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGcc                    <  1:637102/90‑1 (MQ=33)                     ttGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCt                   <  1:87360/90‑1 (MQ=33)                     ttGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCt                   >  1:2154236/1‑90 (MQ=35)                      tGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTg                  <  2:3317169/90‑1 (MQ=33)                      tGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTg                  <  2:475954/90‑1 (MQ=33)                      tGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTg                  <  1:1067707/90‑1 (MQ=33)                       gggACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGt                 <  2:3460672/90‑1 (MQ=33)                        ggACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGtt                <  2:2573262/90‑1 (MQ=33)                        ggACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGtt                <  1:3080333/90‑1 (MQ=33)                        ggACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGtt                <  1:228390/90‑1 (MQ=33)                         gACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTa               >  1:2057679/1‑90 (MQ=33)                          aCCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTAt              >  1:985624/1‑90 (MQ=33)                          aCCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTAt              >  1:2469597/1‑90 (MQ=33)                           ccTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATc             <  2:1481778/90‑1 (MQ=33)                             tACTTCAGCTCCAGGATGTGATGAGCCGAGATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATccc           >  2:2698889/1‑90 (MQ=18)                              aCTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATcccc          <  2:1954093/90‑1 (MQ=33)                              aCTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATcccc          <  1:1555993/90‑1 (MQ=33)                               cTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCg         >  2:2070606/1‑90 (MQ=33)                                ttCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCgg        >  2:847976/1‑90 (MQ=33)                                ttCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCgg        <  2:727328/90‑1 (MQ=33)                                  cAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAg      >  1:1972490/1‑90 (MQ=33)                                   aGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGt     <  1:3135173/90‑1 (MQ=33)                                   aGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGt     <  2:1446513/90‑1 (MQ=33)                                   aGCTCCAGGATGGGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGt     >  1:321143/1‑90 (MQ=18)                                    gCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACGCCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTa    <  2:1963532/90‑1 (MQ=18)                                    gCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTa    >  1:1852894/1‑90 (MQ=33)                                     cTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTAc   <  1:620860/90‑1 (MQ=32)                                      tCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTAcc  >  2:485932/1‑90 (MQ=31)                                      tCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTAcc  >  2:1458097/1‑90 (MQ=31)                                                                                          |                                      AATGGCGAACAGCCATACCCTTGGGACCTACTTCAGCTCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACC  >  AC_000091/3690416‑3690542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑