| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 279782 | 43 (1.390) | 4 (0.140) | 4/144 | 2.9 | 9.3% | coding (871/1968 nt) | yagF | xylonate dehydratase YagF |
| ? | NZ_CP009273 | = 279774 | 39 (1.400) | coding (863/1968 nt) | yagF | xylonate dehydratase YagF | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCGGGCAGGCGGTGTGGCTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCC > NZ_CP009273/279692‑279871 | tcggggcagGCGGTGTGGCTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCC < 2:672926‑M1/88‑1 (MQ=255) gtgtGGCTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAg > 2:1057587/1‑91 (MQ=255) tgtgGCTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCtctc > 1:194222/1‑82 (MQ=255) tgtgGCTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCtctc < 2:194222/82‑1 (MQ=255) cTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCg < 2:163965/91‑1 (MQ=255) gagaTCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGaaa < 2:570808/91‑1 (MQ=255) agaTCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGaaaa > 2:830043/1‑91 (MQ=255) cgcccgccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAAcgcg > 1:835113/1‑91 (MQ=255) gcccgccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCcgcgtggtgatgccgcggc < 1:284224‑M1/83‑20 (MQ=255) gcccgccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGaaa < 2:975541/85‑1 (MQ=255) gcccgccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGaaa > 1:975541/1‑85 (MQ=255) gcccgccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGa > 1:82812/1‑91 (MQ=255) gcccgccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGa < 2:574245/91‑1 (MQ=255) gccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCcgcggggtgatgccgcggctatc < 1:652586‑M1/83‑24 (MQ=255) ccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGc > 2:232760/1‑72 (MQ=255) ccAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGc < 1:232760/72‑1 (MQ=255) gTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTTCGATAAAGCCATCGAAAACGCGATGGTGATc > 1:586246/1‑91 (MQ=255) cgcgcgGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACgcgg < 2:391974/91‑1 (MQ=255) cgcgcgGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACgcgg > 1:125547/1‑91 (MQ=255) gcgGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGt > 1:836453/1‑91 (MQ=255) tGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTccac > 2:453780/1‑91 (MQ=255) tGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTccac > 1:597946/1‑91 (MQ=255) gATAGCCGCGGCATCACCACGCGGGATATCCcgcgtggtgatgccgcggctatccagctcgctgaccgcgcgcgccgactggc < 2:652586‑M1/83‑53 (MQ=255) tAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAAcgc < 2:1025038/54‑1 (MQ=255) tAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAAcgc > 1:1025038/1‑54 (MQ=255) gCCGCGGCATCACCACGCGGGTTATCCcgcgtggtgatgccgcggctatccagctcgctgaccgcgcgcgccgactggcgggc < 2:284224‑M1/83‑57 (MQ=255) gCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAAttt > 2:178081/1‑91 (MQ=255) gCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAAttt < 2:835113/91‑1 (MQ=255) gCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAAttt < 2:145863/91‑1 (MQ=255) ccGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTa > 2:81487/1‑91 (MQ=255) gcgGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTAct > 2:214893/1‑91 (MQ=255) gcgGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTAct > 1:784912/1‑91 (MQ=255) gcgGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTAct > 2:508379/1‑91 (MQ=255) cgGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTACGGCGGCTCCACCAATTTActg < 2:751491/91‑1 (MQ=255) ggCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTccacc > 1:59019/1‑81 (MQ=255) ggCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTccacc < 2:59019/81‑1 (MQ=255) ggCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTActgc > 1:368602/1‑91 (MQ=255) ggCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTActgc > 1:383578/1‑91 (MQ=255) tCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGca < 1:453780/91‑1 (MQ=255) acGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTcgg < 1:306170/62‑1 (MQ=255) acGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTcgg > 2:306170/1‑62 (MQ=255) acGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTc > 2:436867/1‑91 (MQ=255) acGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTc > 2:268754/1‑91 (MQ=255) acGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTc > 2:80996/1‑91 (MQ=255) gATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCa < 2:241381/91‑1 (MQ=255) gATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCa > 2:192070/1‑91 (MQ=255) atatCCcgcgtggtgatgccgcggctatccagctcgctgaccgcgcgcgccgactggcgggcgatctcccgccacaccccccgcccggacg > 1:985967‑M1/1‑6 (MQ=255) atatCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCAt > 1:63432/1‑91 (MQ=255) ccTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGcc > 2:701561/1‑91 (MQ=255) | TCCGGGCAGGCGGTGTGGCTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGCGTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCC > NZ_CP009273/279692‑279871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |