| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,500 | Δ4 bp | coding (124‑127/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613500 | 1613503 | 4 | 34 [0] | [0] 33 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613499 | 0 (0.000) | 33 (0.960) | 23/248 | 0.3 | 100% | coding (123/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613504 = | 0 (0.000) | coding (128/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
GCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTG > NZ_CP009273/1613362‑1613610 | gCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGca < 2:453037/138‑1 (MQ=255)gCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAt > 2:638158‑M1/1‑138 (MQ=255) aCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgct < 2:227828‑M1/139‑11 (MQ=255) cTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgct > 1:38237‑M1/1‑128 (MQ=255) cTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgct < 2:38237‑M1/138‑11 (MQ=255) gCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcg < 1:423123‑M1/139‑30 (MQ=255) gCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcg < 1:561696‑M1/139‑30 (MQ=255) ttCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgta < 2:613383‑M1/138‑37 (MQ=255) ttCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggc < 2:270827‑M1/133‑32 (MQ=255) ttCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggc < 1:28142‑M1/133‑32 (MQ=255) ttCAATGAAATTATTCAATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtat > 1:600500‑M1/1‑102 (MQ=255) cATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaact < 2:600500‑M1/138‑53 (MQ=255) ggTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcg < 1:575752‑M1/110‑30 (MQ=255) ggTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcg > 2:575752‑M1/1‑81 (MQ=255) cTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggc < 1:184669‑M1/107‑32 (MQ=255) cTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggc > 2:184669‑M1/1‑76 (MQ=255) cATATGGTTAATCAGAAGAAAGACCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggt < 2:622930‑M1/139‑71 (MQ=255) atatGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtc < 2:59682‑M1/139‑72 (MQ=255) tatGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtc > 1:248153‑M1/1‑67 (MQ=255) tatGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggc > 2:13175‑M1/1‑67 (MQ=255) tatGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggc < 1:13175‑M1/98‑32 (MQ=255) tGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcga < 2:619789‑M1/138‑74 (MQ=255) tAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgg > 1:422040‑M1/1‑61 (MQ=255) aTCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgg > 2:572005‑M1/1‑59 (MQ=255) aTCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaa < 2:245526‑M1/116‑58 (MQ=255) aTCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaa > 1:245526‑M1/1‑59 (MQ=255) gCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggt > 1:527879‑M1/1‑44 (MQ=255) gCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggt < 2:527879‑M1/114‑71 (MQ=255) aCGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgc < 2:264416‑M1/139‑105 (MQ=255) gTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc < 1:15223‑M1/121‑91 (MQ=255) gTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc > 2:15223‑M1/1‑31 (MQ=255) tCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtctgctggatcgcctggtct > 2:321585‑M1/1‑28 (MQ=255) cTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc < 2:18858‑M1/108‑91 (MQ=255) cTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc > 1:18858‑M1/1‑18 (MQ=255) | GCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTG > NZ_CP009273/1613362‑1613610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |