New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	2763146 =	52 (1.200)	3 (0.080)	3/222	3.4	5.9%	coding (85/702 nt)	yfjR	WYL domain‑containing protein
	?	NZ_CP009273	2763193 =	48 (1.210)					coding (132/702 nt)	yfjR	WYL domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGG  >  NZ_CP009273/2763056‑2763322                                                                                                                                          |                                                                                                                                  tctctcATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTgc                                                                                                                                  >  2:191642/1‑139 (MQ=255)              aGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCg                                                                                                                     >  2:41470/1‑139 (MQ=255)               ggCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGt                                                                                                                    >  2:151012/1‑139 (MQ=255)                gCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTg                                                                                                                   <  2:79614/139‑1 (MQ=255)                gCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTg                                                                                                                   <  1:639417/139‑1 (MQ=255)                    aaCGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAAc                                                                                                                >  2:284189/1‑138 (MQ=255)                     aCGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGa                                                                                                              <  2:107429/139‑1 (MQ=255)                      cgccgcCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGAc                                                                                                             >  1:369216/1‑139 (MQ=255)                         cgccATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGa                                                                                                          >  1:132617/1‑139 (MQ=255)                         cgccATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGa                                                                                                          >  1:282252/1‑139 (MQ=255)                          gccATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGAt                                                                                                         >  1:362953/1‑139 (MQ=255)                          gccATAGCCGGCTGGTGGTCAGGCTGTCACTGATAATCGGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATGTTCGTGAGCGACTGAt                                                                                                         <  2:98694/139‑1 (MQ=18)                                     ctggctgTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAcc                                                                                              >  2:850117/1‑139 (MQ=255)                                     ctggctgTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAcc                                                                                              <  2:282252/139‑1 (MQ=255)                                        gctgtcaggctgtcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTg                                                                                            <  1:45994/138‑1 (MQ=255)                                            tcaggctgtcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTa                                                                                       >  1:361715/1‑139 (MQ=255)                                              aggctgtcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTAt                                                                                      <  2:705493/138‑1 (MQ=255)                                                 ctgtcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGt                                                                                  <  1:284189/139‑1 (MQ=255)                                                    tcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCg                                                                               >  2:174933/1‑139 (MQ=255)                                                                aGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCt                                                                   >  2:146073/1‑139 (MQ=255)                                                                   cGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTAc                                                                <  2:316314/139‑1 (MQ=255)                                                                     tCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACg                                                               >  2:548046/1‑138 (MQ=255)                                                                     tCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGc                                                              <  1:382313/139‑1 (MQ=255)                                                                     tCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGc                                                              <  2:362953/139‑1 (MQ=255)                                                                         gTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCAc                                                            <  2:361715/137‑1 (MQ=255)                                                                            gCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCActgctg                                                       <  2:360264/139‑1 (MQ=255)                                                                            gCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCActgctg                                                       >  1:360264/1‑139 (MQ=255)                                                                               ggTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTgg                                                                                                 >  1:741182/1‑94 (MQ=255)                                                                               ggTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTgg                                                                                                 <  2:741182/94‑1 (MQ=255)                                                                                 tGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGt                                                  <  1:435277/139‑1 (MQ=255)                                                                                 tGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGt                                                  <  1:850117/139‑1 (MQ=255)                                                                                   aaaCGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTg                                                 <  1:208751/138‑1 (MQ=255)                                                                                       gTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATg                                            <  1:778173/139‑1 (MQ=255)                                                                                          gAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATg                                            >  1:498741/1‑136 (MQ=255)                                                                                          gAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATg                                            >  2:63573/1‑136 (MQ=255)                                                                                          gAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATg                                            >  2:618951/1‑136 (MQ=255)                                                                                           aGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATg                                            >  2:778173/1‑135 (MQ=255)                                                                                                 cgcAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAc                                                                                               <  2:88940/78‑1 (MQ=255)                                                                                                 cgcAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAc                                                                                               >  1:88940/1‑78 (MQ=255)                                                                                                 cgcAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGc                                  >  2:241821/1‑139 (MQ=255)                                                                                                  gcAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGcc                                 >  1:314707/1‑139 (MQ=255)                                                                                                    aaaCTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCg                               <  1:63573/139‑1 (MQ=255)                                                                                                          gcggcTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGc                         >  2:663016/1‑139 (MQ=255)                                                                                                           cggcTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGAt                                       <  2:468911/124‑1 (MQ=255)                                                                                                           cggcTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGAt                                       >  1:468911/1‑124 (MQ=255)                                                                                                           cggcTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCt                        <  2:589207/139‑1 (MQ=255)                                                                                                                 aGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCt                   <  1:146073/138‑1 (MQ=255)                                                                                                                      ggCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGcc              <  1:592439/138‑1 (MQ=255)                                                                                                                                tGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCgg   >  2:640103/1‑139 (MQ=255)                                                                                                                                  cgcACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTg                                                                                                  >  1:9004/1‑42 (MQ=255)                                                                                                                                  cgcACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTg                                                                                                  <  2:9004/42‑1 (MQ=255)                                                                                                                                     aCGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCggg  <  1:241801/135‑1 (MQ=255)                                                                                                                                     aCGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCggg  >  2:241801/1‑135 (MQ=255)                                                                                                                                          |                                                                                                                                  TCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGG  >  NZ_CP009273/2763056‑2763322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.