| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,500 | Δ4 bp | coding (124‑127/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613500 | 1613503 | 4 | 36 [0] | [0] 36 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613499 | 0 (0.000) | 36 (0.780) | 29/244 | 0.3 | 100% | coding (123/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613504 = | 0 (0.000) | coding (128/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
GCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAG > NZ_CP009273/1613362‑1613633 | gCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAt > 1:574823‑M1/1‑138 (MQ=255) tgAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctct < 2:676743‑M1/139‑18 (MQ=255) cTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtg > 1:410220‑M1/1‑105 (MQ=255) ttCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAtaaaggtgctctgctctatccgctgcgcggc < 1:716710‑M1/133‑32 (MQ=255) ttCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaa < 2:906951‑M1/139‑51 (MQ=255) ttCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaa < 1:232583‑M1/139‑51 (MQ=255) ttGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactga > 2:167943‑M1/1‑84 (MQ=255) tGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcg < 2:483251‑M1/110‑28 (MQ=255) tGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcg > 1:483251‑M1/1‑83 (MQ=255) tCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcg < 2:149891‑M1/108‑30 (MQ=255) tCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcg > 1:149891‑M1/1‑79 (MQ=255) cTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtat > 2:84021‑M1/1‑76 (MQ=255) cATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggt < 1:84021‑M1/139‑71 (MQ=255) atGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcga > 2:24240‑M1/1‑66 (MQ=255) tGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcga < 1:911559‑M1/138‑74 (MQ=255) aagaaagaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcact < 2:410220‑M1/139‑86 (MQ=255) aagaaagaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgg > 1:731251‑M1/1‑54 (MQ=255) aagaaagaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgg < 2:731251‑M1/132‑79 (MQ=255) gaaagaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcg > 2:258115‑M1/1‑52 (MQ=255) gaaagaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcg < 1:258115‑M1/79‑28 (MQ=255) agaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc < 1:466934‑M1/139‑91 (MQ=255) agaTCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc < 2:548593‑M1/139‑91 (MQ=255) gCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatg > 1:724218‑M1/1‑44 (MQ=255) gCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggcattgtcggtcgacctgggagcactgacccgtatg < 1:167943‑M1/139‑96 (MQ=255) gCCTGCTTAACGAGAATCTGTCTCCGCTGGATATTACCGCGGGCttaaggtgctctgctctatccgatgcgcggagtgtattagtccggttgaactgaaaaaggtattgtcggtcgaactgggagcactgacccgtatg > 2:745620‑M1/1‑44 (MQ=255) aaCGAGTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcg > 1:766415‑M1/1‑36 (MQ=255) gTATCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctgg < 2:574823‑M1/139‑109 (MQ=255) tCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc > 2:572251‑M1/1‑28 (MQ=255) tCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgaccc < 1:572251‑M1/118‑91 (MQ=255) tCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaa > 1:846500‑M1/1‑28 (MQ=255) tCTGTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaa < 2:846500‑M1/83‑56 (MQ=255) gTCTCCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgt > 2:551548‑M1/1‑25 (MQ=255) tcCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaa < 1:26296‑M1/77‑56 (MQ=255) tcCGCTGGATATTACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaa > 2:26296‑M1/1‑22 (MQ=255) tACCGCGGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtgga > 1:830361‑M1/1‑10 (MQ=255) cgGCAttaaggtgctctgctctatccgctgcgcggcgtgtattactccggttgaactgaaaaaggtattgtcggtcgacctgggagcactgacccgtatgctggatcgcctggtctgtaaaggctgggtggaaaggttg > 2:53282‑M1/1‑5 (MQ=255) | GCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAG > NZ_CP009273/1613362‑1613633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |