| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1046002 | 36 (0.740) | 33 (0.680) | 27/244 | 0.5 | 61.9% | intergenic (+16/+417) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | 3370649 = | 5 (0.100) | coding (131/639 nt) | sspA | stringent starvation protein A | |||||
AATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAA > NZ_CP009273/1045873‑1046135 | aaTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttcc < 2:76297‑M1/139‑10 (MQ=255)aaTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg < 1:587086/138‑1 (MQ=33) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 1:470293/1‑139 (MQ=35) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta < 2:924072/139‑1 (MQ=35) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 1:483107/1‑139 (MQ=35) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 2:491581/1‑139 (MQ=35) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta < 1:23827/139‑1 (MQ=35) cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg < 1:769971/139‑1 (MQ=255) gCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGa < 1:712288/137‑1 (MQ=255) ggCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaactta > 2:34659‑M1/1‑108 (MQ=255) ggCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTc > 2:446945/1‑138 (MQ=255) ggACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt > 2:383377/1‑139 (MQ=255) cGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttc < 2:709788‑M1/139‑40 (MQ=255) gAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGta > 2:558610/1‑139 (MQ=255) aaGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttct > 1:34528‑M1/1‑97 (MQ=255) tCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagca < 1:704390‑M1/137‑50 (MQ=255) cGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaa > 1:121489‑M1/1‑87 (MQ=255) ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatg < 2:106116‑M1/139‑55 (MQ=255) ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatg < 1:34659‑M1/139‑55 (MQ=255) tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttc > 2:237764‑M1/1‑84 (MQ=255) tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttc < 1:237764‑M1/123‑40 (MQ=255) aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcg < 2:82576‑M1/136‑57 (MQ=255) aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaa < 2:483107/136‑1 (MQ=255) aaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacct < 1:492461‑M1/139‑62 (MQ=255) gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatgg < 1:406704‑M1/139‑67 (MQ=255) cTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCAt < 2:573121/139‑1 (MQ=255) gCATGACAAAGTCATCGGACATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATAc > 2:663490/1‑139 (MQ=255) cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt < 1:185757/79‑1 (MQ=255) cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt > 2:185757/1‑79 (MQ=255) tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc < 1:780514/139‑1 (MQ=255) tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc < 2:333278/139‑1 (MQ=255) tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc < 1:111234/139‑1 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCtt < 2:865162/139‑1 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCtt < 2:662036/139‑1 (MQ=255) cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcag > 1:166317‑M1/1‑59 (MQ=255) aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtag < 2:883549‑M1/139‑83 (MQ=255) aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCa < 1:860849/139‑1 (MQ=255) aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCa < 2:680889/139‑1 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtag < 1:239849‑M1/136‑83 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtag > 2:239849‑M1/1‑54 (MQ=255) tCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagat > 2:627188‑M1/1‑51 (MQ=255) tCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagat < 1:627188‑M1/125‑75 (MQ=255) cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGc > 2:201568/1‑139 (MQ=255) aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 2:760834‑M1/1‑42 (MQ=255) aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:760834‑M1/42‑1 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcat > 2:948736‑M1/1‑37 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcat > 1:169873‑M1/1‑37 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacag < 1:705097‑M1/132‑96 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacag > 2:705097‑M1/1‑37 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgcg > 2:366214/1‑139 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagtgtcattaccgaac > 2:536962‑M1/1‑30 (MQ=255) tATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcattaccgaacgtttg > 1:568398‑M1/1‑25 (MQ=255) tATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgat > 2:230251‑M1/1‑25 (MQ=255) tATCAATAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgat < 1:230251‑M1/89‑65 (MQ=255) aTCATTAAGTTGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcattaccgaacgtttgt > 2:892907‑M1/1‑24 (MQ=255) tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATaa < 2:762036/67‑1 (MQ=255) tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATaa > 1:762036/1‑67 (MQ=255) tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAggg < 1:663490/139‑1 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAata < 1:383377/138‑1 (MQ=255) gTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAAtata < 1:801633/139‑1 (MQ=255) ttGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcattaccgaacgtttgttggcagcga < 2:775637‑M1/139‑125 (MQ=255) ttGGAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcattaccgaacgtttgttggcagcga > 1:244115‑M1/1‑15 (MQ=255) ggAGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagcaggaccggaaaacagcgtcattaccgaacgtttgttggcagcga > 1:404131‑M1/1‑13 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTg > 1:218766/1‑50 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTg < 2:218766/50‑1 (MQ=255) aGTCATTACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcattaccgaacgtttgttggcagcgacagc > 2:22771‑M1/1‑11 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgcgcg < 1:944284/116‑1 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgcgcg > 2:944284/1‑116 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGtt > 2:489579/1‑138 (MQ=255) ttACCGtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagatgtcagtaggaccggaaaacagcgtcattaccgaacgtttgttggcagcgacagccatg > 1:347735‑M1/1‑6 (MQ=255) ttACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTaa < 1:366214/139‑1 (MQ=255) gtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagat < 2:382908‑M1/75‑75 (MQ=255) gtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctatagat > 1:382908‑M1/1‑1 (MQ=255) | AATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAA > NZ_CP009273/1045873‑1046135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |