New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3823713	62 (1.270)	3 (0.070)	3/226	3.4	4.9%	intergenic (+17/‑104)	xanP/yicH	xanthine/proton symporter XanP/AsmA family protein
	?	NZ_CP009273	= 3823718	59 (1.320)					intergenic (+22/‑99)	xanP/yicH	xanthine/proton symporter XanP/AsmA family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATC  >  NZ_CP009273/3823589‑3823855                                                                                                                                   |                                                                                                                                          ttGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTAccgcc                                                                                                                                   <  2:698638/138‑1 (MQ=255) ttGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTAccgcc                                                                                                                                   <  1:942594/138‑1 (MQ=255)   gCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACcgccgc                                                                                                                                 <  1:54748/138‑1 (MQ=255)   gCAGTTGGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACcgccgc                                                                                                                                 <  2:31086/138‑1 (MQ=255)        ttGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACcgccgccagtg                                                                                                                            >  2:892560/1‑133 (MQ=255)        ttGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGtct                                                                                                                            >  1:35362/1‑138 (MQ=255)         tGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCa                                                                                                                          >  1:894086/1‑139 (MQ=255)          gCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCa                                                                                                                          <  2:241265/138‑1 (MQ=255)          gCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCa                                                                                                                          <  1:63250/138‑1 (MQ=255)                      cTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCAt                                                                                                             >  2:160664/1‑139 (MQ=255)                      cTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCAt                                                                                                             >  1:917133/1‑139 (MQ=255)                      cTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTATCACCTCTTTAACCAt                                                                                                             >  2:805/1‑139 (MQ=255)                        aaaaaaCCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCCCCAGAAAAACAGTAATT‑CACTGGGGGCGGTAAGAAAATTACCGCCGCAGTCTCACCTCTTTAACCATTc                                                                                                           <  2:470164/138‑1 (MQ=255)                          aaacCCTGCCCCCCTCCGGGTCCCCCGCGGGGGGTATTACGCCCATCGTGCTGAATCTGATTTCCCCCCCAGAAAAACAGTAATT‑CACTGGGGGCGTTAAGAAAATTACCGCCGCAGTCTCACCTCTTTAACCATTccc                                                                                                         <  2:825822/139‑1 (MQ=255)                           aaaCCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCg                                                                                                        >  1:241168/1‑139 (MQ=255)                                     ccctccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGAt                                                                                              <  1:286276/138‑1 (MQ=255)                                       ctccGGGACCGCCGCGGGGGTTATTACTGCCATCGTGCTGAATTTGTTTTCCCCCCCAAAAAAACAGTAATT‑CCCTGGCGGCGGTAAGATAATTCCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTg                                                                                            <  2:515687/139‑1 (MQ=255)                                         ccGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAACCAGTAATT‑CACTGGCGGCGGTAAGATAATTCCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTgcg                                                                                          <  1:158795/139‑1 (MQ=255)                                            ggATCCCCGCGGGCGGTATTACTCCCCTCGTTCTGAATCTGATTTTCCCACCAAAAAAACAGTATTT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGt                                                                                       <  1:860203/139‑1 (MQ=255)                                               tCGCCGGGGGCGTTATTCTTCCTATCGTCCTGAATCTGATTTCCCCCCCAAAAAAACAGTAATT‑CGCGGGGGGCGGAAAAAAAATTACCGCCGGAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTaaa                                                                                    <  2:894086/139‑1 (MQ=255)                                                 gccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATc                                                                                  >  1:172775/1‑139 (MQ=255)                                                 gccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATc                                                                                  >  1:515687/1‑139 (MQ=255)                                                 gccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATc                                                                                  >  1:665437/1‑139 (MQ=255)                                                  ccgcGGGCGGTTTTACTCCCATCGTGCTGAATCTGATTTCCCCCCAAGAAAAACAGTAATT‑CCCTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCg                                                                                 <  1:420386/139‑1 (MQ=255)                                                      gggcggTATTCCTGCCATCGTGCTGAATCTGATTTCCCCCCCAAAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCa                                                                             <  1:671238/139‑1 (MQ=255)                                                      gggcggTATTACTGCCATCGTGCTGAATCTGATTTCCCCACCAAAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCa                                                                             <  1:662408/139‑1 (MQ=255)                                                      gcaagttATTCCGGCCATGGTGTTAAATTTGATTTCCCCCCCAAAAAAACAGTATTT‑CACGGGCGGCGGTAAGATAATTCCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCa                                                                             <  2:506716/133‑1 (MQ=255)                                                        gcggTATTATTGCCATCGTGCTGAATCTGATTTCCCCACCAGAAAAACAGTAATT‑CATTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATa                                                                           <  1:5691/139‑1 (MQ=255)                                                        gcggTATTACTGCCATCGTGCGGAATCTGATTTTCCCCCCAAAAAAACAGTAATT‑CCCTGGCGGGGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATa                                                                           <  1:888131/139‑1 (MQ=255)                                                         cgttATTACTGCCATCGTGCTAAATCTGATTTCCCCACCAGAAAAACATTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATaa                                                                          <  2:241168/136‑1 (MQ=255)                                                           ttATTACTCCCACCGTGCTGATTTTGTTTTTCCCACCAGAAAACCAGTAATT‑CACTGGCGGCGGTAAGATAATTCCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACt                                                                        <  2:169299/138‑1 (MQ=255)                                                           gTATTACTGCCATCGTGCTGAATCGGATTTCCCCCCCAAAAAAACAGTAATT‑CACTGGGGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACt                                                                        <  2:790088/139‑1 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTc                                                                                                           >  2:353291/1‑93 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTc                                                                                                           <  1:353291/93‑1 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTactgtc                                                             >  1:506716/1‑134 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  1:689553/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  1:916331/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  1:743391/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  1:878269/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  2:158793/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  2:946247/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  1:926842/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTAtgtg                                                              >  2:731337/1‑138 (MQ=255)                                                                      aTCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGc                                                             >  2:661188/1‑139 (MQ=255)                                                                        cGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCAt                                                           >  1:70946/1‑139 (MQ=255)                                                                        cGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCAt                                                           >  2:256499/1‑139 (MQ=255)                                                                        cGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCAt                                                           >  1:88839/1‑139 (MQ=255)                                                                            ctaattCTGATTTCCCCACCAGAAAATCA‑TAATTCCACTGGCGGCGTTAAGACATTTCCCGCCGCAGTCTCACCTCTTTATCCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCa                                                       <  2:70946/134‑1 (MQ=255)                                                                            cgaaaTCTGATTCTCCCCCCAAAAAAACAGTAATA‑CACAGGCGCGGGTAAGATATTTCCCGCCGCAGTCTCACCTCTTTACCCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCa                                                       <  2:64702/136‑1 (MQ=255)                                                                              gAATCTGATTTCCCCCCCAGAAAAACATTAATT‑CCCGGGGGGCGGAAAGATAATTCCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACg                                                     <  2:128128/139‑1 (MQ=255)                                                                                         tCCCACCAGAAAAAAAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGAc                                          >  1:167156/1‑139 (MQ=255)                                                                                                               ccACGGGGGGGGGAAAGAAAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAgc                      <  2:878269/137‑1 (MQ=255)                                                                                                                 aCTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAgctg                    <  1:160664/138‑1 (MQ=255)                                                                                                                  cgggcggcGGTAAGAAAATTTCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAgctgct                  <  2:592084/137‑1 (MQ=255)                                                                                                                     gcggggGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTg                                                                               <  1:799873/75‑1 (MQ=255)                                                                                                                     gcggcgGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTg                                                                               >  2:799873/1‑75 (MQ=255)                                                                                                                     gcggcgGAAAGAAAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTtct               <  2:214627/139‑1 (MQ=255)                                                                                                                        gcggTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTa            >  2:145778/1‑139 (MQ=255)                                                                                                                        gcggTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTa            >  1:953236/1‑139 (MQ=255)                                                                                                                         cggTAATATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTAc           <  2:665437/139‑1 (MQ=255)                                                                                                                            tAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCtt                                                                   >  1:906285/1‑80 (MQ=255)                                                                                                                            tAAGAAAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCtt                                                                   <  2:906285/80‑1 (MQ=255)                                                                                                                                 tAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCAt   <  2:926842/139‑1 (MQ=255)                                                                                                                                  aaTTCCCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATc  <  1:523489/139‑1 (MQ=255)                                                                                                                                   |                                                                                                                                          TTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGATCGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACCAGAAAAACAGTAATT‑CACTGGCGGCGGTAAGATAATTACCGCCGCAGTCTCACCTCTTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATC  >  NZ_CP009273/3823589‑3823855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.