| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3214079 = | 68 (1.070) | 3 (0.050) | 3/220 | 5.4 | 5.2% | coding (1227/1380 nt) | ygjG | putrescine aminotransferase |
| ? | NZ_CP009273 | 3214204 = | 46 (0.790) | coding (1352/1380 nt) | ygjG | putrescine aminotransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTATTGAGCGTTCCGGCCACCAGTACGCGCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3214224‑3214079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcggCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCC > NZ_CP009273/3214204‑3214336 CTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATTCGGGTCGGTTTTGCGTTATTTAGCGTTTCGGCCCCCAGGACGCG > 1:935946/1‑139CTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTATTGAGCGTTCCGGCCACCAGTACGC < 2:712705/138‑1 ACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCTATGGGTGTCGTTTTGGCGGTATTAAGCGTTCCGGCCACCCATACCCGCCGGCGGCaaa > 2:235731/1‑136 ACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGGTCGTTTTTGCGTTTTTTAGCGTTCCGGGCACCAGGACGCGCCGGCGGgac > 2:1214946/1‑135 CGTTATTGAGCGTTCCGGCCACCAGTACGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCG > 1:51627/1‑64 CGTTATTGAGCGTTCCGGCCACCAGTACGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCG < 2:51627/64‑1 TGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCC > 2:1156029/1‑139 GGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAG > 1:998772/1‑123 GGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAG < 2:998772/123‑1 CTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTATTGAGCGTTCCGGCCACCAGTACGCGCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3214224‑3214079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcggCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCC > NZ_CP009273/3214204‑3214336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |