| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3214079 = | 68 (1.070) | 3 (0.050) | 3/220 | 5.4 | 5.2% | coding (1227/1380 nt) | ygjG | putrescine aminotransferase |
| ? | NZ_CP009273 | 3214204 = | 46 (0.790) | coding (1352/1380 nt) | ygjG | putrescine aminotransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGT > NZ_CP009273/3213943‑3214213 | atatGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCg < 2:589703/139‑1 (MQ=255) gCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAgcgc > 1:796661/1‑139 (MQ=255) cTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGcgcg < 1:647310/139‑1 (MQ=255) cGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑g > 2:793939/1‑139 (MQ=255) cGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑g < 1:348842/139‑1 (MQ=255) cGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑g > 2:348842/1‑139 (MQ=255) cGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑g > 2:1149675/1‑139 (MQ=255) tttCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑ggtg > 1:1057230/1‑139 (MQ=255) tCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGa < 1:904962/139‑1 (MQ=255) cTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGc > 1:235564/1‑139 (MQ=255) ggTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCg > 1:313456/1‑138 (MQ=255) gTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGAt < 2:313456/134‑1 (MQ=255) gTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCa > 2:722791/1‑139 (MQ=255) gAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCg > 2:235281/1‑83 (MQ=255) gAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCg < 1:235281/83‑1 (MQ=255) gAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCAt > 2:667068/1‑134 (MQ=255) gAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCAt < 1:667068/134‑1 (MQ=255) gAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAAc > 2:1136925/1‑139 (MQ=255) aaGCGCGTGGTAAAGGGA‑TGTTGATGGCGTTTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACG‑GGTGGCCGGACCGCTCAAAAACGCAAAAA‑CGACCCGCATTGAAcc < 2:796661/139‑1 (MQ=255) cgcgTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTa > 1:18153/1‑89 (MQ=255) cgcgTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTa < 2:18153/89‑1 (MQ=255) cgcgTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGa < 1:217647/101‑1 (MQ=255) cgcgTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGa > 2:217647/1‑101 (MQ=255) cgcgTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGc > 2:811297/1‑138 (MQ=255) gcgTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCca > 2:16695/1‑139 (MQ=255) ggTGGAAAAGGGA‑TGTTGAGGGGGTTGGATTTTGTTAAAAACGAAATC‑GGTTATAATTTTGCAGGGGAGATTTCCCGCCGGCGCGTACT‑GGTGGCCGAAACGCTAAATAACGCAAAAA‑CGACCCGCATGAAACCGCcac < 2:882922/138‑1 (MQ=255) aaGGGA‑TGTTGAGGGGGATTGATTTTGTTGATAACAAAATC‑GTTTATAACTTTCCCAGGGAGATGTCCCGCCAGCGCGTCGT‑GGTGGCCGGAACGCTCAATAACGCAAAAA‑CGTCCCGCATTAAACCGCcactgacact < 2:221392/139‑1 (MQ=255) aGGGATTGTTGAGGGTGATTGAGTTTGTAAAAAACAAATTC‑GTCTATAGCTTTGCCGGCGAGATGTTCCGCCAGCGGGTCCG‑GGTGGCCGAACCGCTCAATAACGCAAAAT‑CGCTCCGATGTAACCCGCcactgacact < 2:1009073/139‑1 (MQ=255) tGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAt > 2:935946/1‑139 (MQ=255) tGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAt > 2:682850/1‑139 (MQ=255) tGTTGATGGAGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAt > 2:931636/1‑139 (MQ=255) gTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCa < 2:792887/66‑1 (MQ=255) gTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCa > 1:792887/1‑66 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCa < 2:799531/65‑1 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCa > 1:799531/1‑65 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACg < 2:376216/87‑1 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACg > 1:376216/1‑87 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAAt < 2:659015/93‑1 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAAt > 1:659015/1‑93 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 1:957509/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 2:543184/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 2:232971/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 1:648675/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 2:175553/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 1:1239114/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 1:1120853/1‑138 (MQ=255) ttGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCAtt > 1:964665/1‑138 (MQ=255) ggtGGCGATTGTGTTTGTTGATCGAAAAAGG‑GGATATAGCTTGGCCGGAAAGGTGTCCCCCCGGCGGGTACT‑GTTGGCCGGACCGCACAATAACGCAAAAA‑CGCCCCTCTTTAAACCGCCACTGACACTGACCATTGa < 2:610975/136‑1 (MQ=255) gagggCGATTGATTTTGTTGAAAACAAAATC‑GGTTATACCTTTCCCAGCGAGAGGTCCCGCCAGCGCGTACG‑GGGGGCCGAAACGCTAAAAAACGCAAAAA‑CGCCCCGCATTGAACCGCCACTGACACTGACCATTGa < 1:543184/135‑1 (MQ=255) gATGGGGTTGGATTTTGAGGATAACAAAATG‑GGTTATAATTTTCCGGGGGGGTTGCCCGGCCAGCGCGTTCG‑GGTGGCGGAAACGCTAAAAAACGCAAAAA‑CGCTCCGGATTGAACCGCCACTGACACTGACCATTGa < 2:983428/138‑1 (MQ=255) gATGGCGATTGTGTTTGTTAATAACGAAATC‑GGTTATAATTTTGCCAGCGAGATGTCCCGCCAGCGCGTACG‑GGGGGCCGGAACGCTCAAAACCCCAAAAA‑CGATCCGCTTTGAACCGCCACTGACACTGACCATTGa < 1:232971/138‑1 (MQ=255) gATGGCGATTGTGTTT‑TTGAAAACAGAATCTGGCTAAAACTTTGCCAGGTAGGTCTCCGGCCGGCGC‑TGCTGGGGGGCCGGATCACAAAATACCGCAAAAT‑GAATCGGTATTGATCCGCCACTGACACTGACCATTGa < 2:1239114/138‑1 (MQ=255) gATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGCGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACAATTGaa > 2:626101/1‑139 (MQ=255) atggataTTGATTTTGTTGAAAACAAAAGC‑GTTTATATTTTTGCAAGGGAGATTTTCCCCCAGCGGTTATT‑GGTGCCAGAACCGCTCAA‑AACCCCAAAAGCTTCCCGAATTAAACCGCCACTGACACTGACCATTGAAc < 2:598001/133‑1 (MQ=255) aTGGCTTTTGATTTTTTTAATAACAAAATC‑GGTTATATTTTTGCCAGGGAGATGTCCCGCCAGCGCGTACT‑GGGGGCGGGAACGCTAAATAACCCAAAAC‑CGACCCGCATTGAACCGCCACTGACACTGACCATTGaa < 1:1136925/138‑1 (MQ=255) tGGCGTTTGAGTTTGTTAAAAACAAAATC‑GGTTATAATTTTGCCAGGGAGATGTCCCCCCGGCGCGTCTT‑GGTGGCCGGAACGCTAAAAACCGCAAAAA‑CGACCCGCATTGAACCGCCACTGACACTGACCATTGAACa < 1:16695/139‑1 (MQ=255) tGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑g > 1:103742/1‑71 (MQ=255) tGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACt‑g < 2:103742/71‑1 (MQ=255) ggCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAg > 1:290974/1‑139 (MQ=255) gATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCATTGAAcctgtc > 1:451468/1‑134 (MQ=255) aTTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGGGATGTTTCGCCAGCGCGTCCT‑GGTGGCCTGAACGCTCAAGAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACCCTGACCATTGAACAgtgt > 1:471167/1‑138 (MQ=255) gAGTTTGTTGAAAACGAAATG‑GGTTATAACTTTGCCAGGGAGATTTCCCGCCAGCGCGTCCG‑GGTGGCGGAAACGCACAATAGCGCAAAAA‑CGACCCGCTTTAAACCGCCACTGACACTGACCATTGAACAGTGTGaa < 1:811297/138‑1 (MQ=255) gTTTGTTGAAAACAAAATG‑GGTTATAATTTTGCCAGAGAGTTGTTCCGCCAGCGCGTACT‑GGTGGCCGGACCGCTAAAAAACGCAAAAC‑CGACCCGCATTAAGCCGCCACTGACACTGACCATTGAACAGTGTGAACTg < 1:989701/139‑1 (MQ=255) ttgATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCa < 1:255594/46‑1 (MQ=255) ttgATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCa > 2:255594/1‑46 (MQ=255) cggCGAGTTGTCCCGCCGGCGCGTACT‑GGTGCCCGGACCTCAAAAAACCCCAAAAA‑CGCCCCGCTTTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGcc < 2:1124245/137‑1 (MQ=255) gCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAAt < 2:335180/44‑1 (MQ=255) gCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAAt > 1:335180/1‑44 (MQ=255) tttgccgccgGCGGGTATG‑GGTGGCCGGAACGCTTAATACCGCCAAAA‑CGACACCCATAGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGt < 2:235731/135‑1 (MQ=255) gtcccgccgGCGCGTCCT‑GGTGCCCGGAACGCTAAAAAACGCAAAAA‑CGACCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGt < 2:1214946/135‑1 (MQ=255) | ATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGA‑TGTTGATGGCGATTGAGTTTGTTGATAACGAAATC‑GGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACT‑GGTGGCCGGAACGCTCAATAACGCCAAAA‑CGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGT > NZ_CP009273/3213943‑3214213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |