Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3575526	3575536	11	2 [0]	[0] 4	hcp	Hcp1 family type VI secretion system effector

ATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGTAT  >  NZ_CP009273/3575471‑3575525                                                       | atttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGtat  >  1:165787/1‑55 (MQ=255) atttatGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGtat  <  2:165787/55‑1 (MQ=255)                                                       | ATTTATGGGATTTGACTTCTATCGAATAAATAGATTTGGTAGATTGGAAAAGTAT  >  NZ_CP009273/3575471‑3575525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑