Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3575526	3575536	11	2 [0]	[0] 4	hcp	Hcp1 family type VI secretion system effector

ACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATT  >  NZ_CP009273/3575537‑3575612 |                                                                            aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaaaa                              >  1:98295/1‑48 (MQ=255) aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaaaa                              <  2:98295/48‑1 (MQ=255) aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTAtt  >  1:379083/1‑76 (MQ=255) aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTAtt  <  2:379083/76‑1 (MQ=255) |                                                                            ACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATT  >  NZ_CP009273/3575537‑3575612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑