Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4240849	4240927	79	3 [1]	[1] 3	BW25113_RS20970	SopA family protein

GCTTGCAATTTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATC  >  NZ_CP009273/4240901‑4241016                            |                                                                                         gcTTGCAATTTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGtt                            >  1:135433/1‑90 (MQ=255)                            gcgcAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTatcatc  <  1:202721/89‑1 (MQ=255)                            gcgcAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTatcatc  >  2:202721/1‑89 (MQ=255)                            |                                                                                         GCTTGCAATTTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATC  >  NZ_CP009273/4240901‑4241016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑