Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1362244	1362283	40	2 [0]	[1] 3	pspF/pspA	phage shock protein operon transcriptional activator/phage shock protein PspA

ATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATC  >  NZ_CP009273/1362196‑1362243                                                | aTTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATc  >  1:155442/1‑48 (MQ=255) aTTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATc  <  2:155442/48‑1 (MQ=255)                                                | ATTCGCTAACTCATCCTGGCATGTTGCTGTTGATTCTTCAATCAGATC  >  NZ_CP009273/1362196‑1362243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑