Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1362244	1362283	40	2 [0]	[1] 3	pspF/pspA	phage shock protein operon transcriptional activator/phage shock protein PspA

ACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGAC  >  NZ_CP009273/1362273‑1362362            |                                                                               aCGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGAc  >  1:483481/1‑90 (MQ=255)            aTTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGacaac                                <  1:688074/49‑1 (MQ=255)            aTTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGacaac                                >  2:688074/1‑49 (MQ=255)            |                                                                               ACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGAC  >  NZ_CP009273/1362273‑1362362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑