Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3354244	3354306	63	2 [0]	[0] 4	gltD/gltF	glutamate synthase subunit GltD/DUF1120 domain‑containing protein

GATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTC  >  NZ_CP009273/3354199‑3354243                                             | gATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGtctc  <  1:245539/45‑1 (MQ=255) gATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGtctc  >  2:245539/1‑45 (MQ=255)                                             | GATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTC  >  NZ_CP009273/3354199‑3354243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑