Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3354244	3354306	63	2 [0]	[0] 4	gltD/gltF	glutamate synthase subunit GltD/DUF1120 domain‑containing protein

TTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACC  >  NZ_CP009273/3354307‑3354359 |                                                     ttCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATc            <  1:57592/43‑1 (MQ=255) ttCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATc            >  2:57592/1‑43 (MQ=255) ttCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAacc  >  1:412740/1‑53 (MQ=255) ttCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAacc  <  2:412740/53‑1 (MQ=255) |                                                     TTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACC  >  NZ_CP009273/3354307‑3354359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑