Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3575371	3575536	166	2 [0]	[1] 4	hcp	Hcp1 family type VI secretion system effector

GAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATA  >  NZ_CP009273/3575318‑3575370                                                     | gagCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaata  <  1:623702/53‑1 (MQ=255) gagCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaata  >  2:623702/1‑53 (MQ=255)                                                     | GAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATA  >  NZ_CP009273/3575318‑3575370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑