Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3575371	3575536	166	2 [0]	[1] 4	hcp	Hcp1 family type VI secretion system effector

ATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTTATGAATTTAT  >  NZ_CP009273/3575532‑3575626      |                                                                                          ataCAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTTATGaa       >  2:315564/1‑90 (MQ=255)      aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaaaa                                            <  1:230118/48‑1 (MQ=255)      aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGaaaa                                            >  2:230118/1‑48 (MQ=255)      aCTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTTATGAATTTAt  >  1:631644/1‑90 (MQ=255)      |                                                                                          ATACAACTAAGAGGCGCTTTTTTATCGGCTATTCATCACCAGATCATTGAAAACCAACTGGATACAGAAACAATAACTATTAGTTATGAATTTAT  >  NZ_CP009273/3575532‑3575626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑