Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794217	3794256	40	2 [0]	[1] 3	rfaY	lipopolysaccharide core heptose(II) kinase RfaY

CATAACTTTTGTATCATCAATAGAACGAAAAACCT  >  NZ_CP009273/3794182‑3794216                                   | cATAACTTTTGTATCATCAATAGAACGAAAAACCt  <  1:39252/35‑1 (MQ=255) cATAACTTTTGTATCATCAATAGAACGAAAAACCt  >  2:39252/1‑35 (MQ=255)                                   | CATAACTTTTGTATCATCAATAGAACGAAAAACCT  >  NZ_CP009273/3794182‑3794216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑