Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794217	3794256	40	2 [0]	[1] 3	rfaY	lipopolysaccharide core heptose(II) kinase RfaY

AGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCAAGTCTTTGATCTTGCTCTTCTGAATCAT  >  NZ_CP009273/3794236‑3794325                      |                                                                     aGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCAAGTCTTTGATCTTGCTCTTCTGAATCat  >  1:507620/1‑90 (MQ=255)                      aTTGAGGTACTTTGAATTGTTTTCATCGGTaaaaa                                    <  1:116492/35‑1 (MQ=255)                      aTTGAGGTACTTTGAATTGTTTTCATCGGTaaaaa                                    >  2:116492/1‑35 (MQ=255)                      |                                                                     AGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCAAGTCTTTGATCTTGCTCTTCTGAATCAT  >  NZ_CP009273/3794236‑3794325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑