Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794562	3794653	92	2 [0]	[0] 3	rfaJ	lipopolysaccharide 1,2‑glucosyltransferase RfaJ

ATTTTACCGATGGATAAATTGCCCATTTGTGCCACGGTTTAGTTGCACC  >  NZ_CP009273/3794513‑3794561                                                 | aTTTTACCGATGGATAAATTGCCCATTTGTGCCACGGTTTAGTTGCAcc  <  1:31926/49‑1 (MQ=255) aTTTTACCGATGGATAAATTGCCCATTTGTGCCACGGTTTAGTTGCAcc  >  2:31926/1‑49 (MQ=255)                                                 | ATTTTACCGATGGATAAATTGCCCATTTGTGCCACGGTTTAGTTGCACC  >  NZ_CP009273/3794513‑3794561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑