Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794562	3794653	92	2 [0]	[0] 3	rfaJ	lipopolysaccharide 1,2‑glucosyltransferase RfaJ

TATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTAC  >  NZ_CP009273/3794654‑3794743 |                                                                                          tattgtaCTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGa                                               >  1:14813/1‑45 (MQ=255) tattgtaCTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGa                                               <  2:14813/45‑1 (MQ=255) tattgtaCTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTAc  >  1:521048/1‑90 (MQ=255) |                                                                                          TATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTAC  >  NZ_CP009273/3794654‑3794743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑