Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2100667	2100682	16	2 [0]	[0] 2	wzy	O16 family O‑antigen polymerase

AGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGC  >  NZ_CP009273/2100683‑2100745 |                                                               aGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGc  >  1:450956/1‑63 (MQ=255) aGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGc  <  2:450956/63‑1 (MQ=255) |                                                               AGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGAGC  >  NZ_CP009273/2100683‑2100745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑