Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4240749	4240866	118	2 [0]	[1] 3	BW25113_RS20970	SopA family protein

CGTGAAGTCTCAATCAGTAATGATACTATAAGTGTAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGATGGATAA  >  NZ_CP009273/4240834‑4240923                                  |                                                         cGTGAAGTCTCAATCAGTAATGATACTATAAGTGTAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGATGGATaa  >  2:418576/1‑90 (MQ=255)                                  gtAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGa         <  1:73128/50‑1 (MQ=255)                                  gtAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGa         >  2:73128/1‑50 (MQ=255)                                  |                                                         CGTGAAGTCTCAATCAGTAATGATACTATAAGTGTAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGATGGATAA  >  NZ_CP009273/4240834‑4240923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑