New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3135029 =	80 (1.340)	3 (0.060)	3/128	3.4	4.5%	coding (1320/1704 nt)	hybC	hydrogenase 2 large subunit
	?	NZ_CP009273	3135047 =	66 (1.420)					coding (1302/1704 nt)	hybC	hydrogenase 2 large subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAGAAACTGACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/3135135‑3135029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaggatatcctgcaaTTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTGCCAGTCAGTTTCTG  >  NZ_CP009273/3135047‑3135133                                                                                                                                                                                                    ATCAGAAACTGACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAAT                                                                                                          <  1:1202635/90‑1  TCAGAAACTGACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATT                                                                                                         <  1:29952/90‑1           GACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATAT                                                                                                >  2:1091839/1‑90           GACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATT                                                                                                         <  1:1364870/81‑1           GACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATT                                                                                                         >  2:1364870/1‑81            ACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATC                                                                                               <  2:978792/90‑1                 CAACTCGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATCCTGCA                                                                                          <  2:586464/90‑1                 CAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATCCTGCA                                                                                          <  1:1791784/90‑1                 CAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATCCTGCA                                                                                          <  2:1665459/90‑1                                        TGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGA                                                                   <  1:1551722/90‑1                                                  GCTGGGCCGTATTATTGGTCGTACCGTTCCCTGCTGTGAATTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATAC                                                         <  1:1572126/90‑1                                                                            TTCACTGCTGTGAATTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCC                               <  2:1551722/90‑1                                                                                           TGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTG                >  1:308992/1‑90                                                                                           TGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTG                >  2:1390783/1‑90                                                                                                 ATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTGCCAGTC          <  1:978792/90‑1                                                                                                 ATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTGCCAGTC          <  2:239780/90‑1                                                                                                        GCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTGCCAGTCAGTTTCT   >  2:999437/1‑90                                                                                                         CAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTGCCAGTCAGTTTCTG  >  2:562823/1‑90                                                                                                                                                                                                    ATCAGAAACTGACTGGCAACACGCTGGAAGTGGCACAGCTGCACTCCACGCTGGGCCGTATTATTGGTCGTACCGTTCACTGCTGTGAATTGCAGGATATCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/3135135‑3135029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaggatatcctgcaaTTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGTTGCCAGTCAGTTTCTG  >  NZ_CP009273/3135047‑3135133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.