| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3135029 = | 80 (1.340) | 3 (0.060) | 3/128 | 3.4 | 4.5% | coding (1320/1704 nt) | hybC | hydrogenase 2 large subunit |
| ? | NZ_CP009273 | 3135047 = | 66 (1.420) | coding (1302/1704 nt) | hybC | hydrogenase 2 large subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAATGTTCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGT > NZ_CP009273/3134959‑3135117 | gAATGTTCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAAtt > 1:1091839/1‑90 (MQ=255) aaTGTTCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTc < 2:1337176/90‑1 (MQ=255) gTTCGGCTTCACAAAGGTTGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTcaca > 1:1488811/1‑90 (MQ=255) tCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTcac < 2:155802/87‑1 (MQ=255) tCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTcac > 1:155802/1‑87 (MQ=255) tCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCAcagc > 1:353470/1‑90 (MQ=255) tCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCAcagc < 2:191732/90‑1 (MQ=255) ttCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGa < 1:56033/90‑1 (MQ=255) tCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGaa > 2:58246/1‑90 (MQ=255) cacaAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAAc < 1:922819/90‑1 (MQ=255) caAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACgg > 2:889449/1‑90 (MQ=255) aGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTAc < 1:707912/90‑1 (MQ=255) ggtggtGTGATCGCCTTTGTCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACg < 2:799380/90‑1 (MQ=255) ggtggtGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACg < 2:422421/90‑1 (MQ=255) ggtggtGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACg < 2:176332/90‑1 (MQ=255) gttgtgtGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa < 2:1488811/87‑1 (MQ=255) ggtgTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCATTGAACGGTACGAcc > 1:356980/1‑90 (MQ=255) ggtgTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc < 2:1114484/90‑1 (MQ=255) ggtgTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc > 1:1306885/1‑90 (MQ=255) ggtgTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc > 2:1119460/1‑90 (MQ=255) tgtgATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc < 2:560228/88‑1 (MQ=255) tgtgATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc > 1:560228/1‑88 (MQ=255) gtgATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCaat < 2:1496298/90‑1 (MQ=255) tCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa < 1:462065/81‑1 (MQ=255) tCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa > 2:462065/1‑81 (MQ=255) tCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAataata > 2:1452531/1‑90 (MQ=255) tCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAataata > 1:1016247/1‑90 (MQ=255) cGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATAc < 2:1507865/90‑1 (MQ=255) cGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATAc < 2:127616/90‑1 (MQ=255) tttGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGcc < 1:430031/90‑1 (MQ=255) tttGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGcc < 1:1302618/90‑1 (MQ=255) tttGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGcc < 1:1637108/90‑1 (MQ=255) gCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAg < 2:108650/90‑1 (MQ=255) gATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGt < 2:1042397/90‑1 (MQ=255) gATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGt < 1:607130/90‑1 (MQ=255) tatTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc > 2:302411/1‑70 (MQ=255) tatTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGAcc < 1:302411/70‑1 (MQ=255) tatTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGACCAGCGTgg < 1:82502/90‑1 (MQ=255) gTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGc < 2:1088708/90‑1 (MQ=255) tCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCt > 2:1499712/1‑90 (MQ=255) tCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCt > 2:541350/1‑90 (MQ=255) gTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCtgtg > 1:1482463/1‑90 (MQ=255) gTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCtgtg > 1:1582874/1‑90 (MQ=255) gTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCtgtg > 1:91676/1‑90 (MQ=255) gTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCt < 2:962724/87‑1 (MQ=255) gTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCt > 1:962724/1‑87 (MQ=255) gCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGcc < 2:998769/90‑1 (MQ=255) gCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGcc < 2:512139/90‑1 (MQ=255) gCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGcc > 1:225431/1‑90 (MQ=255) gTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTc < 2:91676/90‑1 (MQ=255) gTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTc > 1:351211/1‑90 (MQ=255) gTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTc > 1:1607326/1‑90 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa > 2:39031/1‑46 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa < 1:1130192/46‑1 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa < 1:39031/46‑1 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGa > 2:1130192/1‑46 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTgg < 2:895136/68‑1 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTgg > 1:895136/1‑68 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAg > 2:1233415/1‑90 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAg > 1:437832/1‑90 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAg > 2:1127867/1‑90 (MQ=255) ttGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAg > 1:741586/1‑90 (MQ=255) tGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGc < 2:1582874/90‑1 (MQ=255) ggTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCg > 2:834384/1‑90 (MQ=255) tttGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCgtgt > 1:301352/1‑90 (MQ=255) tttGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCgtgt > 1:133459/1‑90 (MQ=255) | GAATGTTCGGCTTCACAAAGGTGGTGTGATCGCCTTTGCCGATATTGGTGATCAGTGCACTGTATTGGTTTTGCAGGATATCCTGCAATTCACAGCAGTGAACGGTACGACCAATAATACGGCCCAGCGTGGAGTGCAGCTGTGCCACTTCCAGCGTGT > NZ_CP009273/3134959‑3135117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |