| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3950787 = | 44 (0.740) | 4 (0.080) | 3/144 | 3.6 | 9.5% | coding (394/894 nt) | ilvY | HTH‑type transcriptional activator IlvY |
| ? | NZ_CP009273 | 3950869 = | 38 (0.730) | coding (312/894 nt) | ilvY | HTH‑type transcriptional activator IlvY | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGG > NZ_CP009273/3950705‑3950876 | gAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGcc < 1:1460713/90‑1 (MQ=255)gAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGcc < 1:2972/90‑1 (MQ=255)gAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCAGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGcc > 1:750076/1‑90 (MQ=255) aaaaCGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCg < 2:1079828/90‑1 (MQ=255) aaCGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCa < 1:281547/90‑1 (MQ=255) aCGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCAt < 2:1562987/90‑1 (MQ=255) cGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCAt < 2:819767/89‑1 (MQ=255) cGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCAt > 1:819767/1‑89 (MQ=255) cGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATc < 2:613602/90‑1 (MQ=255) ccACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCa > 2:696806/1‑86 (MQ=255) ccACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCa < 1:696806/86‑1 (MQ=255) cACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCAcc < 2:1202632/90‑1 (MQ=255) aCTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCa < 1:137506/90‑1 (MQ=255) aCTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCa < 1:1710435/90‑1 (MQ=255) gcCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCagtagt < 2:1063640/90‑1 (MQ=255) gcCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCagtagt > 2:285342/1‑90 (MQ=255) cGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTaa < 1:688756/90‑1 (MQ=255) gggCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCa > 2:1321727/1‑82 (MQ=255) gggCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCa < 1:1321727/82‑1 (MQ=255) gggCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAg > 2:250053/1‑90 (MQ=255) gCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATc > 1:356984/1‑76 (MQ=255) gCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATc < 2:356984/76‑1 (MQ=255) gCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGtt < 2:388706/90‑1 (MQ=255) gTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAAtc < 1:1446585/90‑1 (MQ=255) tCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCagta < 2:858149/75‑1 (MQ=255) tCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCagta > 1:858149/1‑75 (MQ=255) tCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTcc > 1:85966/1‑90 (MQ=255) gTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCg < 1:250053/90‑1 (MQ=255) aaTCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTc < 2:1000786/90‑1 (MQ=255) aaTCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCCCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTc < 1:1062796/90‑1 (MQ=255) ccGCTTCACCAGTGACCCCCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGc < 2:1194920/90‑1 (MQ=255) ttCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATc > 2:1293401/1‑90 (MQ=255) ccAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGGAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGa > 1:1410747/1‑90 (MQ=255) gTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATc > 1:899749/1‑90 (MQ=255) tttCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt > 2:1618696/1‑90 (MQ=255) tttCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt < 1:662568/90‑1 (MQ=255) tttCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt < 1:1788023/90‑1 (MQ=255) tttCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt < 2:750693/90‑1 (MQ=255) tctCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt < 2:1371607/88‑1 (MQ=255) cATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCt > 1:1348520/1‑90 (MQ=255) aTCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTg < 2:1308582/90‑1 (MQ=255) cGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt < 2:1713438/83‑1 (MQ=255) cGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGAt > 1:1713438/1‑83 (MQ=255) gCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCTACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAg > 1:1477644/1‑90 (MQ=255) cATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAgg < 2:74417/90‑1 (MQ=255) | GAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGG > NZ_CP009273/3950705‑3950876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |