| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3950787 = | 44 (0.740) | 4 (0.080) | 3/144 | 3.6 | 9.5% | coding (394/894 nt) | ilvY | HTH‑type transcriptional activator IlvY |
| ? | NZ_CP009273 | 3950869 = | 38 (0.730) | coding (312/894 nt) | ilvY | HTH‑type transcriptional activator IlvY | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGAT > NZ_CP009273/3950782‑3950957 | cATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCt > 1:1348520/1‑90 (MQ=255) aTCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTg < 2:1308582/90‑1 (MQ=255) gCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCTACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAg > 1:1477644/1‑90 (MQ=255) cATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAgg < 2:74417/90‑1 (MQ=255) cACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCg < 2:524304/90‑1 (MQ=255) cAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGc < 2:559043/90‑1 (MQ=255) tagtaAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCaga < 2:998211/90‑1 (MQ=255) tagtaAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCaga < 2:750076/90‑1 (MQ=255) tagtaAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCaga < 2:1116148/90‑1 (MQ=255) agtaAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCagaa > 2:1739655/1‑90 (MQ=255) aaGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCaga > 1:1085961/1‑86 (MQ=255) aaGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCaga < 2:1085961/86‑1 (MQ=255) aaGTTTAATCTCCACCGACGGGTGTTCCGCGCGAAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTc > 2:1614717/1‑76 (MQ=255) aaGTTTAATCTCCACCGACGGGTGTTCCGCGCGAAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTc < 1:1614717/76‑1 (MQ=255) tAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGc > 2:336177/1‑78 (MQ=255) tAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGc < 1:336177/78‑1 (MQ=255) tAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTa > 2:1705180/1‑90 (MQ=255) tAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTa > 2:1613964/1‑90 (MQ=255) tAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGGCACCGAGCAGAAGATATGTa > 2:50139/1‑90 (MQ=255) ctcCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTc < 1:1705180/90‑1 (MQ=255) cACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGcc > 2:1409442/1‑90 (MQ=255) cACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGcc > 1:772544/1‑90 (MQ=255) gACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGc > 1:463892/1‑67 (MQ=255) gACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGc < 2:463892/67‑1 (MQ=255) gtgtTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGa < 2:234807/90‑1 (MQ=255) tgtTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGAc < 2:1254930/90‑1 (MQ=255) gtTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACg < 2:286427/90‑1 (MQ=255) ttCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACgg > 2:1413696/1‑90 (MQ=255) ccGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGcc > 1:1205622/1‑90 (MQ=255) gcgcgGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCt < 2:1477644/90‑1 (MQ=255) gcgcgGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCt < 2:899749/90‑1 (MQ=255) cgcgGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGATCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCtt < 1:285342/90‑1 (MQ=255) cgGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGc > 1:1158476/1‑90 (MQ=255) gAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGGGCAGAAGATATGTAATTCGCCAGAGAGCGGCGGCCCctgctg > 2:209307/1‑90 (MQ=255) gATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGa > 1:20431/1‑90 (MQ=255) ggcggcAGATGGCTGTAGGCAGCGGTCACCGAGCaga > 1:362601/1‑37 (MQ=255) ggcggcAGATGGCTGTAGGCAGCGGTCACCGAGCaga < 2:362601/37‑1 (MQ=255) ggcggcAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGgcgc < 2:416339/90‑1 (MQ=255) cAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACg > 1:1377691/1‑59 (MQ=255) cAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACg < 2:1377691/59‑1 (MQ=255) ggCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGAt < 1:693313/90‑1 (MQ=255) | CATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGAT > NZ_CP009273/3950782‑3950957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |