New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1903030 =	0 (0.000)	4 (0.280)	4/160	0.9	100%	intergenic (‑7/‑152)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein
	?	NZ_CP009273	= 2063752	NA (NA)					intergenic (‑91/‑3)	BW25113_RS10425/BW25113_RS10435	IS3‑like element IS2 family transposase/TonB‑dependent receptor plug domain‑containing protein

TTAACTAACGCATGCTAGTTTAATGACATAAGGTAGGTGAAACGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/1903076‑1903030 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT  <  NZ_CP009273/2063752‑2063675                                                                                                                               TTAACTAACGCATGCTAGTTTAATGACATAAGGTAGGTGAAACGGAGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                     <  1:193103/90‑1          GCATGCTAGTTTAATGACATAAGGTAGGTTAAACGGAGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                            <  1:229425/90‑1                                   AGGTGAAACGGAGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG   >  1:438936/1‑90                                    GGTGAAACGGAGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT  >  2:78371/1‑90                                                                                                                               TTAACTAACGCATGCTAGTTTAATGACATAAGGTAGGTGAAACGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/1903076‑1903030 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT  <  NZ_CP009273/2063752‑2063675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.