New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1903030 =	0 (0.000)	4 (0.280)	4/160	0.9	100%	intergenic (‑7/‑152)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein
	?	NZ_CP009273	= 2063752	NA (NA)					intergenic (‑91/‑3)	BW25113_RS10425/BW25113_RS10435	IS3‑like element IS2 family transposase/TonB‑dependent receptor plug domain‑containing protein

GAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGA  >  NZ_CP009273/1902952‑1903114                                                                               |                                                                                     gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggattt                                                                           <  2:36876‑M1/90‑7 (MQ=255) actagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacc                                                                           >  2:78371‑M1/79‑90 (MQ=255)  ctagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacct                                                                          >  1:438936‑M1/78‑90 (MQ=255)       cTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccct                                                                     <  2:211816‑M1/90‑13 (MQ=255)         gcgcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctat                                                                   <  2:14824‑M1/90‑15 (MQ=255)           gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT                                                                                 <  1:282941‑M1/74‑1 (MQ=255)           gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT                                                                                 <  1:298055‑M1/74‑1 (MQ=255)           gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT                                                                                 >  2:282941‑M1/1‑74 (MQ=255)           gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT                                                                                 >  2:298055‑M1/1‑74 (MQ=255)              cAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttc                                                              <  1:336955‑M1/90‑20 (MQ=255)                     gcaagcaaGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacat                                                       <  2:413646‑M1/90‑27 (MQ=255)                           tatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTAACCTACCTTATGTCATTAAACTAGCATGc                                                 <  1:229425‑M1/38‑1 (MQ=255)                                    tttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTaa                                        <  1:193103‑M1/47‑1 (MQ=255)                                      acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaaccc                                      <  1:227910‑M1/90‑44 (MQ=255)                                                                          ccAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcga  <  1:248525‑M1/90‑80 (MQ=255)                                                                               |                                                                                     GAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGA  >  NZ_CP009273/1902952‑1903114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.