| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1903035 | 2 (0.140) | 7 (0.490) | 7/158 | 0.5 | 78.0% | intergenic (‑12/‑147) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP009273 | 2062423 = | NA (NA) | intergenic (+2/+10) | BW25113_RS24005/BW25113_RS10425 | TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase | |||||
GAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCT > NZ_CP009273/1902952‑1903124 | gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggattt < 2:36876‑M1/90‑7 (MQ=255)actagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacc > 2:78371‑M1/79‑90 (MQ=255) ctagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacct > 1:438936‑M1/78‑90 (MQ=255) cTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccct < 2:211816‑M1/90‑13 (MQ=255) gcgcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctat < 2:14824‑M1/90‑15 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT < 1:282941‑M1/74‑1 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT < 1:298055‑M1/74‑1 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT > 2:282941‑M1/1‑74 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGT > 2:298055‑M1/1‑74 (MQ=255) cAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttc < 1:336955‑M1/90‑20 (MQ=255) gcaagcaaGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacat < 2:413646‑M1/90‑27 (MQ=255) tatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTAACCTACCTTATGTCATTAAACTAGCATGc < 1:229425‑M1/38‑1 (MQ=255) tttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTaa < 1:193103‑M1/47‑1 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaaccc < 1:227910‑M1/90‑44 (MQ=255) ccAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcga < 1:248525‑M1/90‑80 (MQ=255) gTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgc > 1:422109/1‑90 (MQ=255) tttCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgct > 1:235844/1‑90 (MQ=255) | GAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCT > NZ_CP009273/1902952‑1903124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |