New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1903035	2 (0.140)	7 (0.490)	7/158	0.5	78.0%	intergenic (‑12/‑147)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein
	?	NZ_CP009273	2062423 =	NA (NA)					intergenic (+2/+10)	BW25113_RS24005/BW25113_RS10425	TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase

GGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA  >  NZ_CP009273/2062365‑2062501                                                           |                                                                               ggAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTa                                                 >  2:115879/1‑90 (MQ=255) ggAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTa                                                 >  2:341579/1‑90 (MQ=255)      agagATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACt                                            >  1:330459/1‑90 (MQ=255)      agagATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTAGTGGCTGGATTTGCCCCTATATTTCAAGACATCTGTTATCACt                                            >  2:418629/1‑90 (MQ=255)       gagaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                                           <  1:115879/90‑1 (MQ=255)       gagaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                                           <  1:341579/90‑1 (MQ=255)       gagaTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTAGTGGCTGGATTTGCCCCTATATTTCAAGACATCTGTTATCACtt                                           <  1:418629/90‑1 (MQ=255)            aaCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGAtt                                                                            >  1:259043/1‑52 (MQ=255)            aaCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGAtt                                                                            <  2:259043/52‑1 (MQ=255)                          tGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACAt                                                       <  1:147540/59‑1 (MQ=255)                          tGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACAt                                                       >  2:147540/1‑59 (MQ=255)                                          aaTCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCg        >  2:180636/1‑90 (MQ=255)                                                cATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcga  <  2:133164/90‑1 (MQ=255)                                                cATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcga  <  2:88865/90‑1 (MQ=255)                                                           |                                                                               GGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA  >  NZ_CP009273/2062365‑2062501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.