Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798470	3798480	11	2 [0]	[0] 2	[rfaS]	[rfaS]

GAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAA  >  NZ_CP009273/3798425‑3798469                                             | gAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa  >  1:415802/1‑45 (MQ=255) gAATCATTTTTAATTCATAATCTGCAACCCAATTTataaaataaa  <  2:415802/45‑1 (MQ=255)                                             | GAATCATTTTTAATTCATAATCTGCAACCCAATTTATAAAATAAA  >  NZ_CP009273/3798425‑3798469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑