| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1903035 | 3 (0.140) | 14 (0.640) | 9/164 | 0.7 | 82.5% | intergenic (‑12/‑147) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP009273 | 2062423 = | NA (NA) | intergenic (+2/+10) | BW25113_RS24005/BW25113_RS10425 | TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase | |||||
ATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCT > NZ_CP009273/1902947‑1903124 | caatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGtt > 2:170282‑M1/84‑90 (MQ=255) tGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatt < 1:348174‑M1/90‑6 (MQ=255) gtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacctacc < 1:178708‑M1/16‑1 (MQ=255) aCCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgccc < 1:623997‑M1/90‑11 (MQ=255) cgcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATg < 2:434021/90‑1 (MQ=255) aaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATg > 2:555024‑M1/70‑90 (MQ=255) ctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCAt > 1:205857‑M1/66‑90 (MQ=255) cagcaAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagac > 1:127655‑M1/1‑66 (MQ=255) attaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacc < 2:84929‑M1/12‑1 (MQ=255) attaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCacc > 1:84929‑M1/61‑72 (MQ=255) tatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGc < 2:379461‑M1/38‑1 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttat < 2:396334‑M1/90‑34 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttat < 2:294099‑M1/90‑34 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttat < 1:552269‑M1/90‑34 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttat < 2:272036‑M1/90‑34 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacatctgttatcacttaaccc < 1:373248‑M1/90‑44 (MQ=255) cAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacat < 1:450811‑M1/69‑27 (MQ=255) cAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctatatttccagacat > 2:450811‑M1/1‑43 (MQ=255) aCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctat < 1:596695‑M1/55‑15 (MQ=255) aCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTggatttgcccctat > 2:596695‑M1/1‑41 (MQ=255) tattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCgtt > 1:465202‑M1/35‑75 (MQ=255) tattggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCgtt < 2:465202‑M1/41‑1 (MQ=255) attggttgtctggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTa > 2:313961‑M1/34‑90 (MQ=255) ggagattcagggggccagtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGat < 2:97453‑M1/68‑1 (MQ=255) agtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTa < 2:367223‑M1/61‑1 (MQ=255) agtctaCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTa > 1:367223‑M1/7‑67 (MQ=255) gTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc > 1:621790‑M1/1‑2 (MQ=255) gTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc > 1:360767‑M1/1‑2 (MQ=255) tttCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgct > 2:407639/1‑90 (MQ=255) tttCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgct > 1:438315/1‑90 (MQ=255) | ATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCT > NZ_CP009273/1902947‑1903124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |