New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1903035	3 (0.140)	14 (0.640)	9/164	0.7	82.5%	intergenic (‑12/‑147)	mgrB/yobH	PhoP/PhoQ regulator MgrB/YobH family protein
	?	NZ_CP009273	2062423 =	NA (NA)					intergenic (+2/+10)	BW25113_RS24005/BW25113_RS10425	TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase

TAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGC  >  NZ_CP009273/2062339‑2062499                                                                                     |                                                                             tAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGAttt                                                                         <  2:143160/90‑1 (MQ=255)       aTAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCt                                                                   <  2:50982/90‑1 (MQ=255)                 ggACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAg                                                         <  2:421009/90‑1 (MQ=255)                      tCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATc                                                    <  1:469751/90‑1 (MQ=255)                                 gagaTAACAAACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                                         <  1:436427/90‑1 (MQ=255)                                      aaCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAccc                                    >  1:402176/1‑90 (MQ=255)                                      aaCAGACAACCCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTc                                                            >  1:194730/1‑66 (MQ=255)                                      aaCAGACAACCCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTc                                                            <  2:194730/66‑1 (MQ=255)                                       aCAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCa                                   <  1:75602/90‑1 (MQ=255)                                                          gCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCa                <  2:402176/90‑1 (MQ=255)                                                                        cGCATTCGTGGCTGAATTTGCCCCTATATTTCCAGACATCTGTTATCCCTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgc  <  1:381752/90‑1 (MQ=255)                                                                                     |                                                                             TAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGC  >  NZ_CP009273/2062339‑2062499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.