New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3547436	36 (1.130)	3 (0.100)	3/160	2.5	7.9%	coding (993/2706 nt)	malT	HTH‑type transcriptional regulator MalT
	?	NZ_CP009273	= 3547454	35 (1.140)					coding (1011/2706 nt)	malT	HTH‑type transcriptional regulator MalT
Rejected: Frequency below/above cutoff threshold.

GCTGTTTGGTAACTTCCTGCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3547409‑3547436 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGT  <  NZ_CP009273/3547454‑3547367                                                                                                                      GCTGTTTGGTAACTTCCTGCGCCAGCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACC                            >  2:409731/1‑90    GTTTGGTAACTTCCTGCGCCAGCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACT                         >  1:725851/1‑90                       CAGCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCG      <  1:409731/90‑1                           GCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGT  <  1:156708/90‑1                                                                                                                      GCTGTTTGGTAACTTCCTGCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3547409‑3547436 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGT  <  NZ_CP009273/3547454‑3547367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.