| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3547436 | 36 (1.130) | 3 (0.100) | 3/160 | 2.5 | 7.9% | coding (993/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NZ_CP009273 | = 3547454 | 35 (1.140) | coding (1011/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAA > NZ_CP009273/3547350‑3547524 | cGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGc < 1:894421/90‑1 (MQ=255)cGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGc < 1:421035/90‑1 (MQ=255) ggggCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTg < 2:892032/90‑1 (MQ=255) cTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGcc < 2:714503/82‑1 (MQ=255) cTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGcc > 1:714503/1‑82 (MQ=255) aCAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGgc < 1:156708‑M2/90‑3 (MQ=255) aGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGcggcgg > 2:147788/1‑90 (MQ=255) cGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGgcgctg < 1:409731‑M2/90‑7 (MQ=255) cGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAg > 1:110553/1‑90 (MQ=255) cGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAg > 1:822622/1‑90 (MQ=255) cGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAg > 1:765534/1‑90 (MQ=255) ggatgATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcc < 1:147788/90‑1 (MQ=255) gCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCAcc > 2:8042/1‑90 (MQ=255) gCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCAcc > 2:100233/1‑90 (MQ=255) aGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGgcgctggcgcaggaagttaccaaac > 1:725851‑M2/1‑65 (MQ=255) gTGGTTCTGCTATCCCCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTgc < 1:478196/90‑1 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGgcgctggcgcaggaagttaccaaacagc > 2:409731‑M2/1‑62 (MQ=255) gTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTgccgc < 2:238676/90‑1 (MQ=255) gCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAg < 2:227253/90‑1 (MQ=255) gCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAg < 1:165463/90‑1 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCgg < 2:374282/64‑1 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCgg > 1:374282/1‑64 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGc > 1:888895/1‑90 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGc > 1:217561/1‑90 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGc > 1:498486/1‑90 (MQ=255) gcgctttGGAAACCTCCTGCGCCAGCCCGGCGGGTGGGGACTGGAGGCGGAGAAGACGGAAATCCACCGTGCCGGCGTAGAAAGCTGGAt < 1:504601/86‑1 (MQ=255) gCTGTTTGGTAACTTCCTGCGCCAGCGCcgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcagaacc > 2:409731‑M1/1‑28 (MQ=255) gCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGAt < 1:332233/90‑1 (MQ=255) gCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGAt < 2:314122/90‑1 (MQ=255) gCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGAt < 1:408680/90‑1 (MQ=255) gTTTGGTAACTTCCTGCGCCAGCGCcgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcagaaccact > 1:725851‑M1/1‑25 (MQ=255) gTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGAGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc > 2:221033/1‑90 (MQ=255) tGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCa < 2:259818/90‑1 (MQ=255) ggTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAg > 1:210382/1‑90 (MQ=255) aCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGc > 1:339909/1‑42 (MQ=255) aCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGc < 2:339909/42‑1 (MQ=255) aCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGAt < 2:91959/79‑1 (MQ=255) aCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGAt > 1:91959/1‑79 (MQ=255) aCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGAt > 1:382701/1‑90 (MQ=255) ttCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGc > 2:364895/1‑40 (MQ=255) ttCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGc < 1:364895/40‑1 (MQ=255) cgcCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGc < 2:912719/90‑1 (MQ=255) cAGCGCcgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcagaaccactcgccggtatcatccatccg < 1:409731‑M1/90‑85 (MQ=255) gccgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcagaaccactcgccggtatcatccatccgctgt < 1:156708‑M1/90‑89 (MQ=255) | CGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAA > NZ_CP009273/3547350‑3547524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |