| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3635808 | 82 (1.480) | 3 (0.060) | 3/150 | 3.9 | 4.3% | coding (685/753 nt) | rsmJ | 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ |
| ? | NZ_CP009273 | = 3635857 | 59 (1.160) | coding (636/753 nt) | rsmJ | 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCCTGTTTTAGTTTTACACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGG > NZ_CP009273/3635726‑3635894 | aCCCTGTTTTAGTTTTACACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGcc < 1:903143/90‑1 (MQ=255)aCCCTGTTTTAGTTTTACACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGcc > 1:1020342/1‑90 (MQ=255) gttttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCgg > 1:637711/1‑90 (MQ=255) gttttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCgg > 1:904389/1‑90 (MQ=255) gttttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCgg > 1:1605300/1‑90 (MQ=255) gttttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCgg > 2:944421/1‑90 (MQ=255) tttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTg < 1:536979/90‑1 (MQ=255) tttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTg < 1:94332/90‑1 (MQ=255) tttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTg < 2:637711/90‑1 (MQ=255) tttagttttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTg < 2:1181966/90‑1 (MQ=255) tttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGt > 1:1578116/1‑90 (MQ=255) ttaCACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTa < 2:556206/90‑1 (MQ=255) cTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCg < 1:335766/90‑1 (MQ=255) ggCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCggg > 2:815005/1‑90 (MQ=255) ggCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCggg > 2:730627/1‑90 (MQ=255) ggCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCgg < 1:1230978/89‑1 (MQ=255) ggCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCgg > 2:1230978/1‑89 (MQ=255) gCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgc < 1:865666/90‑1 (MQ=255) gCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgc < 1:1541989/90‑1 (MQ=255) gCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgc < 2:1020342/90‑1 (MQ=255) gCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgc < 2:277217/90‑1 (MQ=255) gCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGACAGCGGTGGCGCGTAGTCCGGgc < 2:1474275/90‑1 (MQ=255) gTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgcgc > 1:710052/1‑90 (MQ=255) aCCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCtt > 2:1233877/1‑90 (MQ=255) gCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgc < 1:50767/82‑1 (MQ=255) gCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGgc > 2:50767/1‑82 (MQ=255) gCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTacc < 1:714666/90‑1 (MQ=255) cATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTacca > 1:1065099/1‑90 (MQ=255) cATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTacca > 1:1109733/1‑90 (MQ=255) cATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCCCCAGCGGTGGCGCGTAGTCCGGGCGCTTTacca > 1:1146607/1‑90 (MQ=255) tAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTaccacc > 2:1553159/1‑90 (MQ=255) tatCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCgg > 1:492815/1‑58 (MQ=255) tatCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCgg < 2:492815/58‑1 (MQ=255) tatCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCAcgc > 2:529291/1‑90 (MQ=255) tatCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCAcgc > 1:1289374/1‑90 (MQ=255) cAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCa < 1:853295/51‑1 (MQ=255) cAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCa > 2:853295/1‑51 (MQ=255) gCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGt < 2:1578116/90‑1 (MQ=255) cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc > 2:1293696/1‑90 (MQ=255) cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc > 1:914228/1‑90 (MQ=255) cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGAGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc > 2:1600234/1‑90 (MQ=255) gATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCg > 1:1511919/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACa < 1:1432514/37‑1 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACa > 2:1432514/1‑37 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCATCGGTGGCGCGTAGTCCggg > 2:66547/1‑64 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCATCGGTGGCGCGTAGTCCggg < 1:66547/64‑1 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCATCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:1460073/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:119541/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:944608/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:853238/1‑90 (MQ=255) tGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGcc > 1:1340695/1‑90 (MQ=255) cTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCa > 1:532283/1‑90 (MQ=255) tttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTACGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCaa > 1:527621/1‑90 (MQ=255) ttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAg > 1:1118280/1‑90 (MQ=255) ttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAg > 1:470686/1‑90 (MQ=255) tAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGc < 2:134194/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTg > 2:1260703/1‑38 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTg < 1:1260703/38‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTTCCACCACGCGTTTGGTCGCCAGCAAGCGTGc < 2:963155/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc > 2:306748/1‑90 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc < 1:306748/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc < 2:803453/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc > 2:529888/1‑90 (MQ=255) aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGct > 2:1578673/1‑89 (MQ=255) aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCa > 2:632514/1‑90 (MQ=255) aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCa > 2:1517399/1‑90 (MQ=255) cTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAg < 2:914228/90‑1 (MQ=255) aCCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGc < 1:52090/90‑1 (MQ=255) aCCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGc < 2:452395/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt < 2:1511919/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt < 1:1173647/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt > 1:276015/1‑90 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt < 2:1065099/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt > 1:442540/1‑90 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt > 1:372869/1‑90 (MQ=255) ttGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAATCGTGCAGGCTCCAGTa < 2:1206952/90‑1 (MQ=255) tggcgtggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTaa > 2:56606/1‑90 (MQ=255) tggcgtggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTaa > 1:1383810/1‑90 (MQ=255) tggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGgc < 2:1167440/36‑1 (MQ=255) tggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGgc > 1:1167440/1‑36 (MQ=255) tggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCAt < 2:1644596/90‑1 (MQ=255) cgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCgg < 2:442540/90‑1 (MQ=255) | ACCCTGTTTTAGTTTTACACTGGCGTACCTGCATAGATATCAAAGCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGG > NZ_CP009273/3635726‑3635894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |