| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3635808 | 82 (1.480) | 3 (0.060) | 3/150 | 3.9 | 4.3% | coding (685/753 nt) | rsmJ | 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ |
| ? | NZ_CP009273 | = 3635857 | 59 (1.160) | coding (636/753 nt) | rsmJ | 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATCTCTTTTTTCAC > NZ_CP009273/3635770‑3635946 | gCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGt < 2:1578116/90‑1 (MQ=255) cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc > 1:914228/1‑90 (MQ=255) cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc > 2:1293696/1‑90 (MQ=255) cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGAGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc > 2:1600234/1‑90 (MQ=255) gATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCg > 1:1511919/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCATCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:1460073/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:944608/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:853238/1‑90 (MQ=255) aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc > 2:119541/1‑90 (MQ=255) tGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGcc > 1:1340695/1‑90 (MQ=255) cTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCa > 1:532283/1‑90 (MQ=255) tttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTACGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCaa > 1:527621/1‑90 (MQ=255) ttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAg > 1:1118280/1‑90 (MQ=255) ttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAg > 1:470686/1‑90 (MQ=255) tAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGc < 2:134194/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTTCCACCACGCGTTTGGTCGCCAGCAAGCGTGc < 2:963155/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc < 1:306748/90‑1 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc > 2:306748/1‑90 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc > 2:529888/1‑90 (MQ=255) gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc < 2:803453/90‑1 (MQ=255) aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGct > 2:1578673/1‑89 (MQ=255) aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCa > 2:1517399/1‑90 (MQ=255) aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCa > 2:632514/1‑90 (MQ=255) cTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAg < 2:914228/90‑1 (MQ=255) aCCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGc < 2:452395/90‑1 (MQ=255) aCCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGc < 1:52090/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt < 2:1511919/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt < 2:1065099/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt < 1:1173647/90‑1 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt > 1:276015/1‑90 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt > 1:372869/1‑90 (MQ=255) ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt > 1:442540/1‑90 (MQ=255) ttGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAATCGTGCAGGCTCCAGTa < 2:1206952/90‑1 (MQ=255) tggcgtggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTaa > 2:56606/1‑90 (MQ=255) tggcgtggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTaa > 1:1383810/1‑90 (MQ=255) tggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCAt < 2:1644596/90‑1 (MQ=255) cgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCgg < 2:442540/90‑1 (MQ=255) tCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCaa < 1:1233877/90‑1 (MQ=255) tCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCaa < 1:399032/90‑1 (MQ=255) cGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGGCGCCAGCAAGCGGGCAGGCTCCAGGAATCCATCGGCATCAAg > 2:1419056/1‑90 (MQ=255) cAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATc < 1:1293696/90‑1 (MQ=255) gCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCg < 1:1230661/90‑1 (MQ=255) gCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCg > 2:343562/1‑90 (MQ=255) cGGTGGCGCGTAGTCCGGGCGCTTTACCCCCACGCGTTTGGTCGCCAGCAAGCGTGCCGGCTCCAGTAATCCATCGGCATCAAGATCCgg < 1:368524/90‑1 (MQ=255) tGGCGCGTAGTCCGGGCGCTTTACCCCCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTcc < 1:119541/90‑1 (MQ=255) ggCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTccc > 1:158385/1‑90 (MQ=255) gcgcGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCcca < 2:1576042/90‑1 (MQ=255) aGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAg < 1:805522/88‑1 (MQ=255) aGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAg > 2:805522/1‑88 (MQ=255) aGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCg < 1:944421/90‑1 (MQ=255) gTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGa > 1:208587/1‑90 (MQ=255) gTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGa > 2:1261427/1‑90 (MQ=255) ccGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTccc < 1:68188/80‑1 (MQ=255) ccGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTccc > 2:68188/1‑80 (MQ=255) gggCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGa > 2:1023499/1‑90 (MQ=255) ggCGCTTTACCACCACGCGTTTGGTCGCCAGCACGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGGCCCACCAGCGACTGaa > 2:908016/1‑90 (MQ=255) ggCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGaa < 1:1263638/90‑1 (MQ=255) tttACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGaca > 1:677354/1‑90 (MQ=255) caccacGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAt > 2:1307558/1‑90 (MQ=255) ccacGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAtct < 1:754561/90‑1 (MQ=255) cacGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAtctc < 1:730627/90‑1 (MQ=255) cacGCGTTTGGTCGCCAGCAAGAGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAtctc < 1:1600234/90‑1 (MQ=255) acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCAtaa < 2:481867/51‑3 (MQ=255) acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCAtaa > 1:481867/1‑49 (MQ=255) acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATctct > 2:1056881/1‑90 (MQ=255) acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATctct > 2:1126939/1‑90 (MQ=255) acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCAACTGAAAg < 2:392803/78‑1 (MQ=255) acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCAACTGAAAg > 1:392803/1‑78 (MQ=255) ggTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATCTCTTTTTTCAc > 2:1387556/1‑90 (MQ=255) | GCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATCTCTTTTTTCAC > NZ_CP009273/3635770‑3635946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |