New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 363580882 (1.480)3 (0.060) 3/150 3.9 4.3% coding (685/753 nt) rsmJ 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ
?NZ_CP009273 = 3635857 59 (1.160)coding (636/753 nt) rsmJ 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATCTCTTTTTTCAC  >  NZ_CP009273/3635770‑3635946
                                                                                       |                                                                                         
gCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGt                                                                                         <  2:1578116/90‑1 (MQ=255)
 cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc                                                                                        >  1:914228/1‑90 (MQ=255)
 cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc                                                                                        >  2:1293696/1‑90 (MQ=255)
 cGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGAGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTc                                                                                        >  2:1600234/1‑90 (MQ=255)
  gATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCg                                                                                       >  1:1511919/1‑90 (MQ=255)
   aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCATCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc                                                                                      >  2:1460073/1‑90 (MQ=255)
   aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc                                                                                      >  2:944608/1‑90 (MQ=255)
   aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc                                                                                      >  2:853238/1‑90 (MQ=255)
   aTGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGc                                                                                      >  2:119541/1‑90 (MQ=255)
    tGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGcc                                                                                     >  1:1340695/1‑90 (MQ=255)
        cTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCa                                                                                 >  1:532283/1‑90 (MQ=255)
         tttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTACGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCaa                                                                                >  1:527621/1‑90 (MQ=255)
          ttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAg                                                                               >  1:1118280/1‑90 (MQ=255)
          ttAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAg                                                                               >  1:470686/1‑90 (MQ=255)
           tAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGc                                                                              <  2:134194/90‑1 (MQ=255)
               gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTTCCACCACGCGTTTGGTCGCCAGCAAGCGTGc                                                                          <  2:963155/90‑1 (MQ=255)
               gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc                                                                          <  1:306748/90‑1 (MQ=255)
               gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc                                                                          >  2:306748/1‑90 (MQ=255)
               gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc                                                                          >  2:529888/1‑90 (MQ=255)
               gACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGc                                                                          <  2:803453/90‑1 (MQ=255)
                aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGct                                                                         >  2:1578673/1‑89 (MQ=255)
                aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCa                                                                         >  2:1517399/1‑90 (MQ=255)
                aCTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCa                                                                         >  2:632514/1‑90 (MQ=255)
                 cTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAg                                                                        <  2:914228/90‑1 (MQ=255)
                   aCCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGc                                                                      <  2:452395/90‑1 (MQ=255)
                   aCCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGc                                                                      <  1:52090/90‑1 (MQ=255)
                    ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt                                                                     <  2:1511919/90‑1 (MQ=255)
                    ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt                                                                     <  2:1065099/90‑1 (MQ=255)
                    ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt                                                                     <  1:1173647/90‑1 (MQ=255)
                    ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt                                                                     >  1:276015/1‑90 (MQ=255)
                    ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt                                                                     >  1:372869/1‑90 (MQ=255)
                    ccGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCt                                                                     >  1:442540/1‑90 (MQ=255)
                          ttGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAATCGTGCAGGCTCCAGTa                                                               <  2:1206952/90‑1 (MQ=255)
                           tggcgtggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTaa                                                              >  2:56606/1‑90 (MQ=255)
                           tggcgtggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTaa                                                              >  1:1383810/1‑90 (MQ=255)
                                tggcgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCAt                                                         <  2:1644596/90‑1 (MQ=255)
                                   cgACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCgg                                                      <  2:442540/90‑1 (MQ=255)
                                         tCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCaa                                                <  1:1233877/90‑1 (MQ=255)
                                         tCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCaa                                                <  1:399032/90‑1 (MQ=255)
                                          cGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGGCGCCAGCAAGCGGGCAGGCTCCAGGAATCCATCGGCATCAAg                                               >  2:1419056/1‑90 (MQ=255)
                                             cAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATc                                            <  1:1293696/90‑1 (MQ=255)
                                               gCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCg                                          <  1:1230661/90‑1 (MQ=255)
                                               gCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCg                                          >  2:343562/1‑90 (MQ=255)
                                                cGGTGGCGCGTAGTCCGGGCGCTTTACCCCCACGCGTTTGGTCGCCAGCAAGCGTGCCGGCTCCAGTAATCCATCGGCATCAAGATCCgg                                         <  1:368524/90‑1 (MQ=255)
                                                   tGGCGCGTAGTCCGGGCGCTTTACCCCCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTcc                                      <  1:119541/90‑1 (MQ=255)
                                                    ggCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTccc                                     >  1:158385/1‑90 (MQ=255)
                                                     gcgcGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCcca                                    <  2:1576042/90‑1 (MQ=255)
                                                           aGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAg                                <  1:805522/88‑1 (MQ=255)
                                                           aGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAg                                >  2:805522/1‑88 (MQ=255)
                                                           aGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCg                              <  1:944421/90‑1 (MQ=255)
                                                            gTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGa                             >  1:208587/1‑90 (MQ=255)
                                                            gTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGa                             >  2:1261427/1‑90 (MQ=255)
                                                              ccGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTccc                                     <  1:68188/80‑1 (MQ=255)
                                                              ccGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTccc                                     >  2:68188/1‑80 (MQ=255)
                                                                gggCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGa                         >  2:1023499/1‑90 (MQ=255)
                                                                 ggCGCTTTACCACCACGCGTTTGGTCGCCAGCACGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGGCCCACCAGCGACTGaa                        >  2:908016/1‑90 (MQ=255)
                                                                 ggCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGaa                        <  1:1263638/90‑1 (MQ=255)
                                                                      tttACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGaca                   >  1:677354/1‑90 (MQ=255)
                                                                           caccacGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAt              >  2:1307558/1‑90 (MQ=255)
                                                                             ccacGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAtct            <  1:754561/90‑1 (MQ=255)
                                                                              cacGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAtctc           <  1:730627/90‑1 (MQ=255)
                                                                              cacGCGTTTGGTCGCCAGCAAGAGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCAtctc           <  1:1600234/90‑1 (MQ=255)
                                                                               acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCAtaa                                                 <  2:481867/51‑3 (MQ=255)
                                                                               acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCAtaa                                                 >  1:481867/1‑49 (MQ=255)
                                                                               acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATctct          >  2:1056881/1‑90 (MQ=255)
                                                                               acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATctct          >  2:1126939/1‑90 (MQ=255)
                                                                               acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCAACTGAAAg                      <  2:392803/78‑1 (MQ=255)
                                                                               acGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCAACTGAAAg                      >  1:392803/1‑78 (MQ=255)
                                                                                       ggTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATCTCTTTTTTCAc  >  2:1387556/1‑90 (MQ=255)
                                                                                       |                                                                                         
GCGATGCCCTTTAGTGACTACCGCGTTTGGCGTGGCGACATTCGCCAGCGGTGGCGCGTAGTCCGGGCGCTTTACCACCACGCGTTTGGTCGCCAGCAAGCGTGCAGGCTCCAGTAATCCATCGGCATCAAGATCCGGTCCCACCAGCGACTGAAAGACACGCATCTCTTTTTTCAC  >  NZ_CP009273/3635770‑3635946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.