| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2886051 | 51 (1.080) | 3 (0.070) | 3/148 | 3.3 | 6.2% | coding (36/1272 nt) | ygcN | FAD‑dependent oxidoreductase |
| ? | NZ_CP009273 | = 2886060 | 43 (0.980) | coding (45/1272 nt) | ygcN | FAD‑dependent oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2885959‑2886051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATCCAGAACACAACACCCTAACATAGCGT < NZ_CP009273/2886060‑2885973 ATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGT < 1:1075679/90‑1ATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGT < 1:369426/90‑1ATTTCCCTTAAGTAACGCTATGTTAGGATGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGT > 2:1180084/1‑90 ACGACTGCGACATTATTATTATTGGTGCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATAT > 2:1325420/1‑90 CGACTGCGACATTATTATTATTGGTGCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATC > 1:499860/1‑90 CATTATTATTATTGGTGCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATCCAGAACACA < 2:499860/90‑1 GTGCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCG > 1:1351401/1‑42 GTGCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCG < 2:1351401/42‑1 GCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATCCAGAACACAAC > 1:245774/1‑76 GCCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATCCAGAACACAAC < 2:245774/76‑1 CCTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATCCAGAACACAACACCCTAACATAGCGT < 1:1387167/90‑1 ATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2885959‑2886051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccTGCAATACCGGCACCAATAATAATAATGTCGCAGTCGTCTTCCATGTCATGCCCCAGATATCCAGAACACAACACCCTAACATAGCGT < NZ_CP009273/2886060‑2885973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |