| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2886051 | 51 (1.080) | 3 (0.070) | 3/148 | 3.3 | 6.2% | coding (36/1272 nt) | ygcN | FAD‑dependent oxidoreductase |
| ? | NZ_CP009273 | = 2886060 | 43 (0.980) | coding (45/1272 nt) | ygcN | FAD‑dependent oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTC > NZ_CP009273/2885973‑2886149 | aCGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAgg > 1:1387167/1‑90 (MQ=255) aTGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCg > 1:505414/1‑90 (MQ=255) aTGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCg > 2:14335/1‑90 (MQ=255) aTGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCg > 2:511719/1‑90 (MQ=255) aTGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCg > 1:1277715/1‑90 (MQ=255) aTGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGAATTGCAGGCACCg > 1:872588/1‑90 (MQ=255) tAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTg > 2:953762/1‑90 (MQ=255) tAGGATGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTg < 1:1180084/90‑1 (MQ=255) gggTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTgcg > 1:241048/1‑90 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGTCACCGCTTGCGCGtt > 1:975053/1‑90 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGc > 2:245774/1‑76 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGc < 1:245774/76‑1 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTg > 2:397204/1‑84 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTg < 1:397204/84‑1 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTTCGCGtt > 2:498127/1‑90 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGtt > 1:1264156/1‑90 (MQ=255) gttgtgttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGtt > 2:651228/1‑90 (MQ=255) cTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGTCACCGCTTGCGCGTTACGCTgcg < 2:975053/90‑1 (MQ=255) ggATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgcg > 2:1030351/1‑90 (MQ=255) tCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGc < 1:511719/90‑1 (MQ=255) tGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCgg < 1:953762/90‑1 (MQ=255) ggggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTTCGCGCGAGCggg > 2:419838/1‑90 (MQ=255) ggggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCggg > 1:317678/1‑90 (MQ=255) ggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTg > 1:751572/1‑76 (MQ=255) ggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTg < 2:751572/76‑1 (MQ=255) ggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGtt > 1:81827/1‑90 (MQ=255) aTGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGtt > 1:1122815/1‑90 (MQ=255) aTGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGtt < 2:1264156/90‑1 (MQ=255) acgacTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTAc < 1:1467817/90‑1 (MQ=255) cgacTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCAc < 1:1351401/42‑1 (MQ=255) cgacTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCAc > 2:1351401/1‑42 (MQ=255) cgacTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACt > 1:681765/1‑90 (MQ=255) gCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCg > 1:199691/1‑65 (MQ=255) gCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCg < 2:199691/65‑1 (MQ=255) ttattattattGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTg < 1:1112991/90‑1 (MQ=255) tGGTGCCGGTATTTCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGTTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCgg > 2:647616/1‑90 (MQ=255) tGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAAc > 1:1220328/1‑74 (MQ=255) tGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAAc < 2:1220328/74‑1 (MQ=255) tGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCgg > 2:1477227/1‑90 (MQ=255) tGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCgg > 1:181749/1‑90 (MQ=255) tGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCgg > 2:79298/1‑90 (MQ=255) gTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAg > 1:1417722/1‑45 (MQ=255) gTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAg < 2:1417722/45‑1 (MQ=255) gTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGgca > 2:1173740/1‑90 (MQ=255) gCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCTGGTTTATcc > 2:1221039/1‑54 (MQ=255) gCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCTGGTTTATcc < 1:1221039/54‑1 (MQ=255) aTTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAAt < 2:317678/90‑1 (MQ=255) aGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTc > 2:1021227/1‑90 (MQ=255) | ACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTC > NZ_CP009273/2885973‑2886149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |